Factsheet for TraesCS6B01G002800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G099400.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G115800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G099700.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16640.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G16640.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G16640.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT3G16640.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G16640.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G033200.1	Barley	cytosol	76.16	77.98
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	75.58	77.38
Os11t0660500-01	Rice	extracellular	75.0	76.79
Solyc01g099780.2.1	Tomato	cytosol, nucleus, unclear	74.42	76.19
VIT_05s0020g01170.t01	Wine grape	cytosol	73.26	75.45
VIT_14s0060g02270.t01	Wine grape	cytosol	73.26	75.0
KRH33890	Soybean	cytosol, nucleus	72.67	74.4
Solyc01g099770.2.1	Tomato	plastid	72.09	73.81
GSMUA_Achr9P20280_001	Banana	cytosol	70.93	73.05
GSMUA_Achr3P00730_001	Banana	cytosol	70.93	73.05
KRH37101	Soybean	cytosol, endoplasmic reticulum, nucleus	70.93	72.62
KRH12062	Soybean	cytosol, nucleus	70.35	72.46
GSMUA_Achr1P14760_001	Banana	cytosol	70.35	72.46
OQU84170	Sorghum	cytosol	69.77	71.86
GSMUA_Achr7P03740_001	Banana	cytosol	69.77	71.86
Zm00001d014957_P001	Maize	plastid	68.6	70.66
AT3G05540.1	Thale cress	cytosol	68.6	70.24
PGSC0003DMT400063575	Potato	cytosol	70.35	67.22
CDY43119	Canola	cytosol	63.95	65.48
AT3G16640.1	Thale cress	cytosol	63.95	65.48
Bra022172.1-P	Field mustard	cytosol	63.95	65.48
CDX92089	Canola	cytosol	63.95	65.48
Zm00001d014954_P002	Maize	cytosol	68.02	65.0
CDX82396	Canola	cytosol	62.21	63.69
Bra001637.1-P	Field mustard	cytosol	62.21	63.69
CDX75889	Canola	cytosol	62.21	63.69
CDY28353	Canola	cytosol	62.21	63.69
GSMUA_Achr11P...	Banana	cytosol	58.72	63.52
Bra021187.1-P	Field mustard	cytosol	61.63	63.1
CDY34963	Canola	cytosol	61.63	63.1
GSMUA_Achr5P00170_001	Banana	cytosol	53.49	61.33
KXG28492	Sorghum	cytosol	46.51	59.26
Bra040541.1-P	Field mustard	cytosol	30.23	57.78
CDY18821	Canola	cytosol	30.23	57.78
KRG92901	Soybean	cytosol	44.19	45.51

Protein Annotations

EnsemblPlants:TraesCS6B01G002800.1	EnsemblPlantsGene:TraesCS6B01G002800	Gene3D:2.170.150.10	InterPro:IPR011323	InterPro:IPR034737	InterPro:Mss4-like_sf
InterPro:Mss4/transl-control_tumour	InterPro:TCTP	InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p	ncoils:Coil	PANTHER:PTHR11991
PANTHER:PTHR11991:SF0	PFAM:PF00838	PFscan:PS51797	PRINTS:PR01653	ScanProsite:PS01003	SEG:seg
SUPFAM:SSF51316	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:2167276..2169107

Molecular Weight (calculated)

19591.9 Da

IEP (calculated)

4.121

GRAVY (calculated)

-0.365

Length

172 amino acids

Sequence
(BLAST)

001: MIVYQDRLPG NELLSDSFLY RELENGVLWE VDGQWVVQGA VDVDIGANPC NEGGDHEGGD QEGVDEEAVK VIDIVDTFRL QELPAFERKE FCTYMKRYIK
101: NLSAKLEDEE QECFKNNIES ATKFLFSKLA DFQFFVGESM HDDGSLVFAY YKDGAADPTF LYFAHGLKKI NC

Best Arabidopsis Sequence Match ( AT3G16640.1 )
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC

Arabidopsis Description

TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.