CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16640.1	CDY03088	AT2G01950.1	19000166
AT3G16640.1	CDY17621	AT2G01950.1	19000166
AT3G16640.1	CDY42827	AT2G42580.1	19000166
AT3G16640.1	CDY51514	AT2G42580.1	19000166
AT3G16640.1	CDY55390	AT2G42580.1	19000166
AT3G16640.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021187.1-P	Field mustard	cytosol	100.0	100.0
CDX82396	Canola	cytosol	99.4	99.4
CDX75889	Canola	cytosol	98.21	98.21
CDY28353	Canola	cytosol	94.64	94.64
CDX92089	Canola	cytosol	91.07	91.07
CDY43119	Canola	cytosol	91.07	91.07
AT3G16640.1	Thale cress	cytosol	89.29	89.29
OQU84170	Sorghum	cytosol	77.38	77.84
Zm00001d014957_P001	Maize	plastid	76.79	77.25
Os11t0660500-01	Rice	extracellular	76.79	76.79
HORVU4Hr1G033200.1	Barley	cytosol	74.4	74.4
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	72.02	72.02
TraesCS4A01G169100.1	Wheat	cytosol	71.43	71.43
Zm00001d014954_P002	Maize	cytosol	76.19	71.11
TraesCS4D01G145400.1	Wheat	cytosol	52.38	67.69
KXG28492	Sorghum	cytosol	52.38	65.19
TraesCS6B01G002800.1	Wheat	cytosol	63.1	61.63
CDY18821	Canola	cytosol	32.74	61.11

Protein Annotations

Gene3D:2.170.150.10	MapMan:35.1	UniProt:A0A078HDR3	EnsemblPlants:CDY34963	ProteinID:CDY34963	ProteinID:CDY34963.1
EnsemblPlantsGene:GSBRNA2T00057548001	InterPro:IPR011323	InterPro:IPR034737	InterPro:Mss4-like_sf	InterPro:Mss4/transl-control_tumour	PFAM:PF00838
PRINTS:PR01653	ScanProsite:PS01002	ScanProsite:PS01003	PFscan:PS51797	PANTHER:PTHR11991	PANTHER:PTHR11991:SF0
SUPFAM:SSF51316	InterPro:TCTP	InterPro:Translation_control_tumour_CS	InterPro:Translational_control_tumour_p	UniParc:UPI00025439ED	SEG:seg

Description

BnaA01g27710DBnaA01g27710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDR3]

Coordinates

chrLK032344:-:48656..50180

Molecular Weight (calculated)

19042.6 Da

IEP (calculated)

4.358

GRAVY (calculated)

-0.411

Length

168 amino acids

Sequence
(BLAST)

001: MLVYTDLLTG DELLSDSFPY KEIENGILWE VEGKWTTKGC VEVNIGANPS AEEGGEDEGV DDSVEKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLTPEQQEEF KKGIEGATKY LLPKLKDFQF FVGEGMHDDS TIVFAYYKEG ATNPTFLYFG HGLKEVKC

Best Arabidopsis Sequence Match ( AT3G05540.1 )
(BLAST)

001: MLVYQDILTG DELLSDSFPY KEIENGMLWE VEGKWVVKGA MDFDIGANPG EEGGEDEGVD DQAVKVVDII DTFRLQEQPS FDKKQFVMFM KRYIKQLSPK
101: LDSENQELFK KHIESATKFL MSKLKDFQFF VGESMEGEEG SLVFAYYREG ATDPTFLYLA YGLKEIKC

Arabidopsis Description

Methionine sulfoxide reductase (MSS4-like) family protein [Source:TAIR;Acc:AT3G05540]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.