Factsheet for Zm00001d014957_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16640.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT3G16640.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT3G16640.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT3G16640.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT3G16640.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT3G16640.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT3G16640.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT3G16640.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT3G16640.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014954_P002	Maize	cytosol	99.4	92.22
OQU84170	Sorghum	cytosol	83.83	83.83
VIT_05s0020g01170.t01	Wine grape	cytosol	82.04	82.04
HORVU4Hr1G033200.1	Barley	cytosol	82.04	81.55
VIT_14s0060g02270.t01	Wine grape	cytosol	81.44	80.95
GSMUA_Achr9P20280_001	Banana	cytosol	80.84	80.84
KRH33890	Soybean	cytosol, nucleus	80.24	79.76
Os11t0660500-01	Rice	extracellular	80.24	79.76
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	80.24	79.76
GSMUA_Achr1P14760_001	Banana	cytosol	79.64	79.64
TraesCS4A01G169100.1	Wheat	cytosol	79.64	79.17
GSMUA_Achr3P00730_001	Banana	cytosol	79.04	79.04
TraesCS4D01G145400.1	Wheat	cytosol	61.08	78.46
GSMUA_Achr7P03740_001	Banana	cytosol	78.44	78.44
Solyc01g099780.2.1	Tomato	cytosol, nucleus, unclear	78.44	77.98
Bra022172.1-P	Field mustard	cytosol	77.84	77.38
CDY43119	Canola	cytosol	77.84	77.38
CDY28353	Canola	cytosol	77.84	77.38
CDX92089	Canola	cytosol	77.84	77.38
CDX75889	Canola	cytosol	77.84	77.38
KRH12062	Soybean	cytosol, nucleus	77.25	77.25
Bra021187.1-P	Field mustard	cytosol	77.25	76.79
Bra001637.1-P	Field mustard	cytosol	77.25	76.79
CDX82396	Canola	cytosol	77.25	76.79
KRH37101	Soybean	cytosol, endoplasmic reticulum, nucleus	77.25	76.79
CDY34963	Canola	cytosol	77.25	76.79
AT3G16640.1	Thale cress	cytosol	76.65	76.19
Solyc01g099770.2.1	Tomato	plastid	76.05	75.6
AT3G05540.1	Thale cress	cytosol	71.86	71.43
KXG28492	Sorghum	cytosol	57.48	71.11
TraesCS6B01G002800.1	Wheat	cytosol	70.66	68.6
PGSC0003DMT400063575	Potato	cytosol	73.05	67.78
GSMUA_Achr11P...	Banana	cytosol	61.68	64.78
Bra040541.1-P	Field mustard	cytosol	34.73	64.44
CDY18821	Canola	cytosol	34.73	64.44
GSMUA_Achr5P00170_001	Banana	cytosol	56.29	62.67
KRG92901	Soybean	cytosol	49.1	49.1

Protein Annotations

EntrezGene:103626513	Gene3D:2.170.150.10	MapMan:35.1	ProteinID:AQK67712.1	ProteinID:AQK67716.1	ProteinID:AQK67718.1
UniProt:B4FL17	EMBL:BT037805	EMBL:EU958767	EMBL:EU958870	InterPro:IPR011323	InterPro:IPR034737
InterPro:Mss4-like_sf	InterPro:Mss4/transl-control_tumour	PFAM:PF00838	PRINTS:PR01653	ScanProsite:PS01002	ScanProsite:PS01003
PFscan:PS51797	PANTHER:PTHR11991	PANTHER:PTHR11991:SF0	SUPFAM:SSF51316	InterPro:TCTP	InterPro:Translation_control_tumour_CS
InterPro:Translational_control_tumour_p	UniParc:UPI00017B6A5F	EnsemblPlantsGene:Zm00001d014957	EnsemblPlants:Zm00001d014957_P001	EnsemblPlants:Zm00001d014957_T001	SEG:seg

Description

Translationally-controlled tumor protein homolog

Coordinates

chr5:-:69975365..69978200

Molecular Weight (calculated)

18729.1 Da

IEP (calculated)

4.270

GRAVY (calculated)

-0.297

Length

167 amino acids

Sequence
(BLAST)

001: MLVYQDLLSG DELLSDSFTY KELENGVLWE VEGKWVTQGP VDVDIGANPS AEGGEDESVD DTAVKVVDIV DTFRLQEQPP FDKKSFVSYI KKYIKNLTAV
101: LEPEKADEFK KGVEGATKFL LSKLKDLQFF VGESMKDDAS VVFAYYKDGA TNPTFLYFSH GLKEIKC

Best Arabidopsis Sequence Match ( AT3G16640.1 )
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC

Arabidopsis Description

TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.