CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g02270.t01	Wine grape	cytosol	91.07	91.07
GSMUA_Achr9P20280_001	Banana	cytosol	87.5	88.02
GSMUA_Achr1P14760_001	Banana	cytosol	86.9	87.43
GSMUA_Achr3P00730_001	Banana	cytosol	86.9	87.43
GSMUA_Achr7P03740_001	Banana	cytosol	85.71	86.23
KRH37101	Soybean	cytosol, endoplasmic reticulum, nucleus	85.12	85.12
Os11t0660500-01	Rice	extracellular	85.12	85.12
HORVU4Hr1G033200.1	Barley	cytosol	83.93	83.93
KRH12062	Soybean	cytosol, nucleus	83.33	83.83
OQU84170	Sorghum	cytosol	82.74	83.23
TraesCS4B01G144200.1	Wheat	cytosol, golgi, plastid, unclear	82.74	82.74
TraesCS4A01G169100.1	Wheat	cytosol	82.14	82.14
TraesCS4D01G145400.1	Wheat	cytosol	62.5	80.77
Zm00001d014957_P001	Maize	plastid	79.76	80.24
Zm00001d014954_P002	Maize	cytosol	79.17	73.89
GSMUA_Achr11P...	Banana	cytosol	69.64	73.58
TraesCS6B01G002800.1	Wheat	cytosol	74.4	72.67
KXG28492	Sorghum	cytosol	55.36	68.89
GSMUA_Achr5P00170_001	Banana	cytosol	61.31	68.67
KRG92901	Soybean	cytosol	61.31	61.68

Protein Annotations

EntrezGene:100305730	Gene3D:2.170.150.10	MapMan:35.1	EMBL:ACUP02006564	EMBL:BT089489	UniProt:C6SWE6
EnsemblPlantsGene:GLYMA_10G151800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0030154	InterPro:IPR011323	InterPro:IPR034737	EnsemblPlants:KRH33890	ProteinID:KRH33890	ProteinID:KRH33890.1
InterPro:Mss4-like_sf	InterPro:Mss4/transl-control_tumour	PFAM:PF00838	PRINTS:PR01653	ScanProsite:PS01002	ScanProsite:PS01003
PFscan:PS51797	PANTHER:PTHR11991	PANTHER:PTHR11991:SF0	SUPFAM:SSF51316	InterPro:TCTP	InterPro:Translation_control_tumour_CS
InterPro:Translational_control_tumour_p	UniParc:UPI0001B14EEF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:38664102..38666285

Molecular Weight (calculated)

19068.6 Da

IEP (calculated)

4.276

GRAVY (calculated)

-0.359

Length

168 amino acids

Sequence
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KETENGMLWE VEGKWVVQGA VNVDIGANPS AEGGDEDEGV DDQAVKVVDI VDTFRLQEQP PFDKKQFITY MKRYIKLLTA
101: KLEGEQQELF KKHIEGATKS LLSKLKDLQF FVGESMHDDG SLVFAYYKEG ATDPTFIYFA YGLKEIKC

Best Arabidopsis Sequence Match ( AT3G16640.1 )
(BLAST)

001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC

Arabidopsis Description

TCTP1Translationally-controlled tumor protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P31265]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.