Factsheet for Os03t0794500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
extracellular: 19038476
mitochondrion: 23027867
plasma membrane: 27800704

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	96.84	96.84
OQU90838	Sorghum	cytosol, mitochondrion	95.86	95.86
Zm00001d034420_P002	Maize	plasma membrane	95.62	95.62
HORVU4Hr1G061100.1	Barley	cytosol	16.55	91.89
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	91.0	91.0
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	90.75	90.75
Solyc10g078550.1.1	Tomato	extracellular	88.08	88.08
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	88.08	88.08
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	96.84	87.28
TraesCS5B01G437100.2	Wheat	extracellular	96.59	86.87
KRG94812	Soybean	cytosol, mitochondrion	86.86	86.86
KRH06711	Soybean	cytosol, mitochondrion	86.62	86.62
KRH08494	Soybean	mitochondrion	85.64	85.64
AT5G18170.1	Thale cress	cytosol, mitochondrion	85.4	85.4
Bra036428.1-P	Field mustard	cytosol, mitochondrion	84.91	84.91
CDY21157	Canola	cytosol, mitochondrion	84.91	84.91
CDY25453	Canola	cytosol, mitochondrion	84.91	84.91
CDY29969	Canola	cytosol, mitochondrion	84.91	84.91
AT3G03910.1	Thale cress	cytosol, mitochondrion	84.67	84.67
Bra002139.1-P	Field mustard	mitochondrion	84.43	84.43
CDY38492	Canola	mitochondrion	84.18	84.18
KRH70158	Soybean	extracellular, mitochondrion	84.18	84.18
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	81.75	81.75
TraesCS7D01G412300.1	Wheat	cytosol	33.58	81.66
TraesCS1D01G322800.1	Wheat	cytosol	14.36	78.67
Os02t0650900-01	Rice	mitochondrion	76.89	76.89
KRG88968	Soybean	cytosol	39.17	76.3
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	88.81	75.88
CDY64896	Canola	mitochondrion	84.18	75.71
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	37.23	75.37
TraesCS1B01G166200.2	Wheat	cytosol	24.09	73.88
TraesCS1D01G080500.1	Wheat	cytosol	18.0	68.52
TraesCS6D01G031800.1	Wheat	cytosol	17.52	66.67
TraesCS5D01G021500.1	Wheat	cytosol	20.44	62.22
TraesCS1B01G472700.1	Wheat	cytosol	19.22	58.52
Bra031964.1-P	Field mustard	mitochondrion	75.91	55.12
Os01t0358900-00	Rice	cytosol	14.84	54.46
CDY50862	Canola	cytosol, mitochondrion, plastid	82.24	51.84
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	13.87	44.88
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	27.01	35.46
Os01t0558200-01	Rice	mitochondrion	25.3	15.14

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EntrezGene:4334405	ProteinID:AAO37984.1	EMBL:AB024962
ProteinID:ABF99322.1	ProteinID:ABF99323.1	ProteinID:ABF99324.1	EMBL:AY332470	ProteinID:BAF13454.1	ProteinID:BAS86820.1
ProteinID:EAZ28893.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004353	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006520	GO:GO:0006950	GO:GO:0006995
GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991
GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	GO:GO:1901698	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS
InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	EnsemblPlantsGene:Os03g0794500
EnsemblPlants:Os03t0794500-01	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074
PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	UniProt:Q852M0	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI0000002702	RefSeq:XP_015631051.1	RefSeq:XP_015631052.1	:	:	:

Description

GLUTAMATE DEHYDROGENASE 1Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH). (Os03t0794500-01)

Coordinates

chr3:-:33038059..33041471

Molecular Weight (calculated)

44344.1 Da

IEP (calculated)

6.588

GRAVY (calculated)

-0.176

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATSRN FKQAAKLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS YVGFRVQHDN ARGPMKGGIR YHHEVDPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCSPG DLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTNSQTM AWILDEYSKF HGYSPAVVTG KPVDLGGSLG RDAATGRGVL FATEALLAEH
201: GKGIAGQRFV IQGFGNVGSW AAQLISEAGG KVIAISDVTG AVKNSNGLDI AKLMKHSSEN RGIKGFDGGD AIDPRSLLTE ECDVLIPAAL GGVINKDNAN
301: EIKAKYIIEA ANHPTDPEAD EILSKKGVLI LPDILANSGG VTVSYFEWVQ NIQGFMWDEE KVNNELKTYM TRGFRDVKEM CRSHHCDLRM GAFTLGVNRV
401: ARATVLRGWE A

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.