CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21157	Canola	cytosol, mitochondrion	59.36	94.16
CDY29969	Canola	cytosol, mitochondrion	59.2	93.92
AT3G03910.1	Thale cress	cytosol, mitochondrion	58.13	92.21
Bra031964.1-P	Field mustard	mitochondrion	79.29	91.34
CDY25453	Canola	cytosol, mitochondrion	56.29	89.29
CDY38492	Canola	mitochondrion	55.83	88.56
CDY64896	Canola	mitochondrion	61.04	87.09
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	54.29	86.13
KRH06711	Soybean	cytosol, mitochondrion	54.29	86.13
KRG94812	Soybean	cytosol, mitochondrion	54.29	86.13
Solyc10g078550.1.1	Tomato	extracellular	54.14	85.89
KRH70158	Soybean	extracellular, mitochondrion	53.53	84.91
KRH08494	Soybean	mitochondrion	53.37	84.67
HORVU4Hr1G061100.1	Barley	cytosol	9.51	83.78
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	26.07	83.74
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	51.99	82.48
Os03t0794500-01	Rice	mitochondrion	51.84	82.24
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	51.84	82.24
CDX87065	Canola	cytosol, mitochondrion	28.53	81.94
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	51.38	81.51
OQU90838	Sorghum	cytosol, mitochondrion	51.07	81.02
CDY65233	Canola	mitochondrion	47.55	76.92
CDX70039	Canola	mitochondrion	47.55	76.92
KRG88968	Soybean	cytosol	24.85	76.78
CDY55181	Canola	mitochondrion	47.39	76.67
CDY14044	Canola	mitochondrion	47.39	76.67
CDX81051	Canola	mitochondrion	47.09	76.18
CDX78292	Canola	mitochondrion	47.09	76.18
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	55.06	74.64
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	51.84	74.12
TraesCS5B01G437100.2	Wheat	extracellular	51.84	73.96
TraesCS7D01G412300.1	Wheat	cytosol	17.18	66.27
TraesCS1B01G166200.2	Wheat	cytosol	13.34	64.93
TraesCS1D01G322800.1	Wheat	cytosol	6.44	56.0
TraesCS5D01G021500.1	Wheat	cytosol	11.35	54.81
TraesCS1D01G080500.1	Wheat	cytosol	8.44	50.93
TraesCS6D01G031800.1	Wheat	cytosol	8.28	50.0
TraesCS1B01G472700.1	Wheat	cytosol	10.28	49.63
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	7.21	37.01
Zm00001d016419_P001	Maize	mitochondrion, plastid	11.81	35.48
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	12.73	26.52
CDY52956	Canola	cytosol	16.72	19.29
CDY46542	Canola	cytosol	16.56	19.11
CDY33875	Canola	cytosol	16.41	17.23
CDY22863	Canola	cytosol	16.72	17.19
CDY18551	Canola	cytosol	5.83	11.34

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:A0A078ILP4	UniProt:A0A078ILP4	EnsemblPlants:CDY50862
ProteinID:CDY50862	ProteinID:CDY50862.1	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00097689001	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom
InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PFAM:PF08268	PRINTS:PR00082
ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223
TIGRFAMs:TIGR01640	UniParc:UPI0004EDFF84	SEG:seg	:	:	:

Description

BnaA05g37230DBnaA05g37230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILP4]

Coordinates

chrLK032945:+:23718..27188

Molecular Weight (calculated)

71791.8 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.235

Length

652 amino acids

Sequence
(BLAST)

001: MKHIYTNTNM KCVGISLYIY THLQYQESHF PVAFLSKSNK PKIKNTMNAL AATNRNFKLA SRLLGLDSKL EQSLLIPFRE IKVECTIPKD DGTLASFVGF
101: RVQHDNARGP MKGGIRYHPE VEPDEVNALA QLMTWKTAVA KIPYGGAKGG IGCDPSELSI SELERLTRVF TQKIHDLIGI HTDVPAPDMG TGPQTMAWIL
201: DEYSKFHGHS PAIVTGKPID LGGSLGRDAA TGRGVLFATE ALLNEHGKSI AGQRFAIQGF GNVGSWAAKL INEKGGKIVA VNDVTGAIKN KDGINISGLL
301: EHTEENIGVK GFDGADAIDA DSVLVEDCDI LVPAALGGVI HRENANEIKA KFIIEGANHP TDPEADEILR KKGVVILPDI YANSGGVIVS YFEWVQNIQG
401: FMWDEEKVNK ELKSYMTRGF KDLKDMCKTH SCDLRMGAFS LGVNRVAQAT TGRRPSASSA PAPWPKSWRS LDALSYTPVT HSVCINGVLH FGAQSFVDPN
501: KYKIVTFNLG SERFGLIDLP DELQINPVVD RLVKYRGTAC LVKYDNCFDL PDGKRVHRLF VKEENEDKLS PILVQIPGWR NVAGNLHFDF KGTTEEDEEL
601: VFASRSVGRD GYHYLIYFNS ETELLRKIKI DGGSSGDDVV TEIDHFDSLL LT

Best Arabidopsis Sequence Match ( AT3G03910.1 )
(BLAST)

001: MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS ELSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG RDAATGRGVL FATEALLNEH
201: GKTISGQRFA IQGFGNVGSW AAKLISDKGG KIVAVSDVTG AIKNNNGIDI LSLLEHAEEN RGIKGFDGAD SIDPDSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEG ANHPTDPEAD EILKKKGVMI LPDIYANSGG VTVSYFEWVQ NIQGFMWDEE KVNRELKTYM TRGFKDLKEM CQTHSCDLRM GAFTLGINRV
401: AQATTIRGWG S

Arabidopsis Description

GSH3Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178VBI2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.