CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036428.1-P	Field mustard	cytosol, mitochondrion	99.27	99.27
CDY21157	Canola	cytosol, mitochondrion	99.27	99.27
AT3G03910.1	Thale cress	cytosol, mitochondrion	94.4	94.4
CDY25453	Canola	cytosol, mitochondrion	91.24	91.24
CDY38492	Canola	mitochondrion	90.51	90.51
KRG94812	Soybean	cytosol, mitochondrion	88.81	88.81
KRH06711	Soybean	cytosol, mitochondrion	88.81	88.81
KRH08494	Soybean	mitochondrion	87.1	87.1
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	86.86	86.86
KRH70158	Soybean	extracellular, mitochondrion	86.86	86.86
Solyc10g078550.1.1	Tomato	extracellular	86.37	86.37
CDY64896	Canola	mitochondrion	95.13	85.56
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	84.91	84.91
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	84.91	84.91
Os03t0794500-01	Rice	mitochondrion	84.91	84.91
OQU90838	Sorghum	cytosol, mitochondrion	84.43	84.43
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	83.94	83.94
HORVU4Hr1G061100.1	Barley	cytosol	15.09	83.78
CDX87065	Canola	cytosol, mitochondrion	45.5	82.38
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	39.9	80.79
KRG88968	Soybean	cytosol	41.12	80.09
CDX70039	Canola	mitochondrion	77.86	79.4
CDY65233	Canola	mitochondrion	77.86	79.4
CDY55181	Canola	mitochondrion	77.37	78.91
CDX78292	Canola	mitochondrion	77.37	78.91
CDX81051	Canola	mitochondrion	77.37	78.91
CDY14044	Canola	mitochondrion	77.37	78.91
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	89.29	76.3
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	83.94	75.66
TraesCS5B01G437100.2	Wheat	extracellular	83.7	75.27
TraesCS7D01G412300.1	Wheat	cytosol	28.22	68.64
TraesCS1B01G166200.2	Wheat	cytosol	21.17	64.93
TraesCS1D01G322800.1	Wheat	cytosol	11.19	61.33
CDY50862	Canola	cytosol, mitochondrion, plastid	93.92	59.2
TraesCS1D01G080500.1	Wheat	cytosol	14.84	56.48
TraesCS5D01G021500.1	Wheat	cytosol	18.25	55.56
TraesCS6D01G031800.1	Wheat	cytosol	14.36	54.63
TraesCS1B01G472700.1	Wheat	cytosol	16.55	50.37
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.17	39.37
Zm00001d016419_P001	Maize	mitochondrion, plastid	18.73	35.48
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	21.65	28.43
CDY52956	Canola	cytosol	26.76	19.47
CDY46542	Canola	cytosol	26.52	19.29
CDY33875	Canola	cytosol	26.52	17.55
CDY22863	Canola	cytosol	26.76	17.35
CDY18551	Canola	cytosol	9.25	11.34

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:A0A078GXY3	UniProt:A0A078GXY3	EnsemblPlants:CDY29969
ProteinID:CDY29969	ProteinID:CDY29969.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00044487001
InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	InterPro:NAD(P)-bd_dom_sf
InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074
PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0004EB95E6

Description

BnaC01g40390DGlutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078GXY3]

Coordinates

chrLK032247:+:125377..127317

Molecular Weight (calculated)

44555.5 Da

IEP (calculated)

6.358

GRAVY (calculated)

-0.195

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FIGFRVQHDN ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS ELSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG RDAATGRGVL FATEALLSEH
201: GKSISGQRFV IQGFGNVGSW AAKLINEKGG KIVAVSDVTG AIKNKNGIDI SGLLEHTEEN RGIKGFDGAD CIDPDSVLVE DCDVLVPAAL GGVINRENAN
301: EIKAKFIIEG ANHPTDPEAD EILRKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNKELRNYM TRGFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATVIRGWG S

Best Arabidopsis Sequence Match ( AT3G03910.1 )
(BLAST)

001: MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS ELSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG RDAATGRGVL FATEALLNEH
201: GKTISGQRFA IQGFGNVGSW AAKLISDKGG KIVAVSDVTG AIKNNNGIDI LSLLEHAEEN RGIKGFDGAD SIDPDSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEG ANHPTDPEAD EILKKKGVMI LPDIYANSGG VTVSYFEWVQ NIQGFMWDEE KVNRELKTYM TRGFKDLKEM CQTHSCDLRM GAFTLGINRV
401: AQATTIRGWG S

Arabidopsis Description

GSH3Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178VBI2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.