CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034420_P002	Maize	plasma membrane	97.08	97.08
Os03t0794500-01	Rice	mitochondrion	95.86	95.86
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	95.13	95.13
HORVU4Hr1G061100.1	Barley	cytosol	16.55	91.89
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	91.24	91.24
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	90.51	90.51
Solyc10g078550.1.1	Tomato	extracellular	87.59	87.59
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	87.59	87.59
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	95.13	85.75
KRH06711	Soybean	cytosol, mitochondrion	85.4	85.4
KRG94812	Soybean	cytosol, mitochondrion	85.4	85.4
TraesCS5B01G437100.2	Wheat	extracellular	94.89	85.34
KRH08494	Soybean	mitochondrion	84.67	84.67
AT5G18170.1	Thale cress	cytosol, mitochondrion	84.67	84.67
CDY29969	Canola	cytosol, mitochondrion	84.43	84.43
Bra036428.1-P	Field mustard	cytosol, mitochondrion	84.18	84.18
CDY21157	Canola	cytosol, mitochondrion	84.18	84.18
CDY25453	Canola	cytosol, mitochondrion	83.7	83.7
AT3G03910.1	Thale cress	cytosol, mitochondrion	83.45	83.45
KRH70158	Soybean	extracellular, mitochondrion	83.21	83.21
Bra002139.1-P	Field mustard	mitochondrion	83.21	83.21
CDY38492	Canola	mitochondrion	82.97	82.97
EES11206	Sorghum	mitochondrion	80.54	80.54
TraesCS7D01G412300.1	Wheat	cytosol	32.36	78.7
KRG88968	Soybean	cytosol	39.17	76.3
TraesCS1D01G322800.1	Wheat	cytosol	13.87	76.0
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	37.23	75.37
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	87.59	74.84
CDY64896	Canola	mitochondrion	82.73	74.4
TraesCS1B01G166200.2	Wheat	cytosol	23.6	72.39
TraesCS1D01G080500.1	Wheat	cytosol	17.27	65.74
TraesCS6D01G031800.1	Wheat	cytosol	16.79	63.89
TraesCS5D01G021500.1	Wheat	cytosol	19.46	59.26
TraesCS1B01G472700.1	Wheat	cytosol	18.73	57.04
Bra031964.1-P	Field mustard	mitochondrion	74.7	54.24
CDY50862	Canola	cytosol, mitochondrion, plastid	81.02	51.07
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	13.14	42.52
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	26.03	34.19
EES00914	Sorghum	cytosol	25.3	16.0

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	UniProt:A0A1B6QHH2	GO:GO:0003674	GO:GO:0003824
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639
GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH
ProteinID:KXG37371.1	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	EnsemblPlants:OQU90838	ProteinID:OQU90838	ProteinID:OQU90838.1
PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606
PANTHER:PTHR11606:SF18	SMART:SM00839	EnsemblPlantsGene:SORBI_3001G059100	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0001C80D00

Description

hypothetical protein

Coordinates

chr1:+:4443395..4449987

Molecular Weight (calculated)

44156.8 Da

IEP (calculated)

6.191

GRAVY (calculated)

-0.134

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATSRN FKQAAKLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS YVGFRVQHDN ARGPMKGGIR YHHEVDPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCSPG DLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTNSQTM AWILDEYSKF HGYSPAVVTG KPVDLGGSLG RDAATGRGVL FATEALLAEH
201: GKGISGQRFV IQGFGNVGSW AAQLINEAGG KVIAISDVTG AVKNVNGLDI AQLVKHSAEN RGIKGFNGGD AIDPNSLLTE ECDVLIPAAL GGVINKDNAN
301: DIKAKYIIEA ANHPSDPEAD EILSKKGVII LPDILANSGG VTVSYFEWVQ NIQGFMWDEE KVNAELRTYM TRAFGDVKEM CRSHNCDLRM GAFTLGVNRV
401: ARATVLRGWE A

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.