Factsheet for VIT_08s0007g07400.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytoskeleton

Predictor Summary:

cytosol 1
mitochondrion 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, golgi, peroxisome
Any Predictor:	cytoskeleton, cytosol, mitochondrion, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06711	Soybean	cytosol, mitochondrion	78.38	91.73
AT5G18170.1	Thale cress	cytosol, mitochondrion	77.96	91.24
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	77.96	91.24
KRG94812	Soybean	cytosol, mitochondrion	77.96	91.24
CDY25453	Canola	cytosol, mitochondrion	77.75	91.0
Solyc10g078550.1.1	Tomato	extracellular	77.55	90.75
Bra002139.1-P	Field mustard	mitochondrion	77.34	90.51
CDY38492	Canola	mitochondrion	77.13	90.27
KRH08494	Soybean	mitochondrion	76.72	89.78
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	76.51	89.54
CDY29969	Canola	cytosol, mitochondrion	76.3	89.29
CDY21157	Canola	cytosol, mitochondrion	76.09	89.05
Bra036428.1-P	Field mustard	cytosol, mitochondrion	76.09	89.05
AT3G03910.1	Thale cress	cytosol, mitochondrion	76.09	89.05
KRH70158	Soybean	extracellular, mitochondrion	76.09	89.05
Os03t0794500-01	Rice	mitochondrion	75.88	88.81
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	75.26	88.08
OQU90838	Sorghum	cytosol, mitochondrion	74.84	87.59
Zm00001d034420_P002	Maize	plasma membrane	74.43	87.1
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	74.22	86.86
HORVU4Hr1G061100.1	Barley	cytosol	13.1	85.14
KRG88968	Soybean	cytosol	35.76	81.52
VIT_16s0039g02750.t01	Wine grape	cytosol	68.81	80.54
VIT_16s0039g02720.t01	Wine grape	mitochondrion	68.19	79.81
TraesCS5B01G437100.2	Wheat	extracellular	75.26	79.21
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	75.05	79.17
CDY64896	Canola	mitochondrion	74.84	78.77
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	32.64	77.34
VIT_00s1491g00010.t01	Wine grape	cytosol, mitochondrion	37.84	75.83
VIT_00s0204g00160.t01	Wine grape	cytosol	14.76	75.53
TraesCS7D01G412300.1	Wheat	cytosol	24.74	70.41
TraesCS1B01G166200.2	Wheat	cytosol	18.5	66.42
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	24.12	65.91
TraesCS1D01G322800.1	Wheat	cytosol	9.77	62.67
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	50.1	58.5
Bra031964.1-P	Field mustard	mitochondrion	68.19	57.95
TraesCS1D01G080500.1	Wheat	cytosol	12.89	57.41
TraesCS6D01G031800.1	Wheat	cytosol	12.47	55.56
TraesCS5D01G021500.1	Wheat	cytosol	15.59	55.56
CDY50862	Canola	cytosol, mitochondrion, plastid	74.64	55.06
TraesCS1B01G472700.1	Wheat	cytosol	14.55	51.85
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.19	38.58
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	18.92	29.07
VIT_09s0002g02530.t01	Wine grape	cytosol	23.08	17.48

Protein Annotations

EntrezGene:100232993	wikigene:100232993	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	ProteinID:ABF57084
ProteinID:ABF57084.1	ProteinID:ABF57085	ProteinID:ABF57085.1	ProteinID:AEO72335	ProteinID:AEO72335.1	ProteinID:CCB55197
ProteinID:CCB55197.1	EMBL:DQ497631	EMBL:DQ497632	UniProt:F6HLB4	EMBL:FN595991	EntrezGene:GDHB
wikigene:GDHB	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS
InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	EMBL:JF796045	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH
PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606
PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	TIGR:TC67688	UniParc:UPI0002107FA4
ArrayExpress:VIT_08s0007g07400	EnsemblPlantsGene:VIT_08s0007g07400	EnsemblPlants:VIT_08s0007g07400.t01	unigene:Vvi.20960	unigene:Vvi.8294	SEG:seg

Description

Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HLB4]

Coordinates

chr8:+:20944163..20949939

Molecular Weight (calculated)

52506.1 Da

IEP (calculated)

6.440

GRAVY (calculated)

-0.065

Length

481 amino acids

Sequence
(BLAST)

001: MTGFGDNLVG FCGTDSDSAA GFFTCNLYIN IVCLWIRSRI WIWIWIGLDY LSQPPDFSPI FGLYTVPRPT MNALVATNRN FKLAARLLGL DSKLEKSLLI
101: PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVANIPYGG AKGGIGCNPG ELSLSELERL TRVFTQKIHD
201: LIGVSTDVPA PDMGTNPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVL FATEALLHEH GKSIAGQRFV IQGFGNVGSW AAQLISEHGG
301: KIVAVSDITG AIKNSKGIDI PSLLKHSVEH RGVKGFNGAD PIDPKSILVE DCDVLIPAAL GGVINRENAN EIKAKFIIEA ANHPTDPEAD EILSKKGVVI
401: LPDIYANSGG VTVSYFEWVQ NIQGFMWDEE KVNNELRTYM TRGFKDVKEM CRTHNCDLRM GAFTLGVNRV ARATVLRGWE A

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.