Factsheet for VIT_00s0204g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1491g00010.t01	Wine grape	cytosol, mitochondrion	92.55	36.25
KRH57522	Soybean	mitochondrion	74.47	16.99
VIT_16s0039g02720.t01	Wine grape	mitochondrion	73.4	16.79
KRH77294	Soybean	mitochondrion	73.4	16.79
KRH04228	Soybean	mitochondrion	73.4	16.75
CDX70039	Canola	mitochondrion	71.28	16.63
CDY65233	Canola	mitochondrion	71.28	16.63
CDY14044	Canola	mitochondrion	71.28	16.63
CDY55181	Canola	mitochondrion	71.28	16.63
VIT_16s0039g02750.t01	Wine grape	cytosol	72.34	16.55
CDX81051	Canola	mitochondrion	70.21	16.38
CDX78292	Canola	mitochondrion	70.21	16.38
Bra028697.1-P	Field mustard	mitochondrion	71.28	16.3
Bra009263.1-P	Field mustard	mitochondrion	71.28	16.3
Bra005935.1-P	Field mustard	mitochondrion	70.21	16.06
AT5G07440.1	Thale cress	mitochondrion	70.21	16.06
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	75.53	14.76
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	28.72	6.55
VIT_09s0002g02530.t01	Wine grape	cytosol	19.15	2.83
CDX87065	Canola	cytosol, mitochondrion	3.19	1.32
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	0.0	0.0

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.720	ProteinID:CCB62810	ProteinID:CCB62810.1	UniProt:F6I792	EMBL:FN596769
GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00208	PANTHER:PTHR11606
PANTHER:PTHR11606:SF18	SUPFAM:SSF51735	UniParc:UPI000210ABD1	ArrayExpress:VIT_00s0204g00160	EnsemblPlantsGene:VIT_00s0204g00160	EnsemblPlants:VIT_00s0204g00160.t01

Description

No Description!

Coordinates

chrUn:+:12254601..12255168

Molecular Weight (calculated)

10823.9 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.493

Length

94 amino acids

Sequence
(BLAST)

1: MVYTFSQRDN AAHVKAKFII EAANHPTDPE ADENIQGFMW DEEKVNHELQ KYMRRSFLDV KAMCQTLNCS LRMGSFTSGV NRVARATLLR GWQA

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.