CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04228	Soybean	mitochondrion	96.12	96.12
KRH77294	Soybean	mitochondrion	92.72	92.94
Bra009263.1-P	Field mustard	mitochondrion	87.14	87.35
CDX70039	Canola	mitochondrion	85.44	87.34
CDY65233	Canola	mitochondrion	85.44	87.34
Bra028697.1-P	Field mustard	mitochondrion	86.89	87.1
AT5G07440.1	Thale cress	mitochondrion	86.89	87.1
CDY14044	Canola	mitochondrion	85.19	87.1
CDY55181	Canola	mitochondrion	85.19	87.1
Solyc03g094010.2.1	Tomato	unclear	86.41	86.62
CDX87065	Canola	cytosol, mitochondrion	47.57	86.34
Bra005935.1-P	Field mustard	mitochondrion	85.92	86.13
PGSC0003DMT400021509	Potato	mitochondrion	85.92	86.13
CDX81051	Canola	mitochondrion	84.22	86.1
CDX78292	Canola	mitochondrion	84.22	86.1
PGSC0003DMT400041325	Potato	mitochondrion	83.5	83.7
PGSC0003DMT400070951	Potato	mitochondrion	83.25	83.45
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	82.77	82.97
GSMUA_Achr2P10430_001	Banana	mitochondrion	82.52	82.73
TraesCS2B01G409300.1	Wheat	mitochondrion	82.28	82.48
Solyc06g033860.1.1	Tomato	unclear	82.28	82.48
Solyc05g052100.2.1	Tomato	unclear	82.28	82.08
TraesCS2A01G389900.1	Wheat	mitochondrion	81.8	82.0
EES11206	Sorghum	mitochondrion	80.83	81.02
Zm00001d025984_P001	Maize	mitochondrion	79.85	80.05
Os02t0650900-01	Rice	mitochondrion	79.61	79.81
VIT_00s1491g00010.t01	Wine grape	cytosol, mitochondrion	46.36	79.58
KRG94812	Soybean	cytosol, mitochondrion	79.37	79.56
KRH70158	Soybean	extracellular, mitochondrion	79.13	79.32
KRH08494	Soybean	mitochondrion	79.13	79.32
KRH06711	Soybean	cytosol, mitochondrion	79.13	79.32
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	50.97	79.25
TraesCS2D01G388800.1	Wheat	mitochondrion	82.28	76.01
VIT_00s0204g00160.t01	Wine grape	cytosol	16.99	74.47
KRG88968	Soybean	cytosol	35.44	69.19
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	29.13	68.18
KRH09218	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.25	27.64
KRH38711	Soybean	endoplasmic reticulum	10.19	22.22
KRH44203	Soybean	nucleus	26.21	16.95
KRH47165	Soybean	nucleus	25.97	16.8

Protein Annotations

EntrezGene:100793231	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EMBL:ACUP02002850	EnsemblPlantsGene:GLYMA_05G066200
GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C
InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	UniProt:I1K0W4	EnsemblPlants:KRH57522	ProteinID:KRH57522	ProteinID:KRH57522.1
InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082
ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI0002339DEA	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:6482196..6486368

Molecular Weight (calculated)

44879.0 Da

IEP (calculated)

6.587

GRAVY (calculated)

-0.130

Length

412 amino acids

Sequence
(BLAST)

001: MNALAATNRN FQRAARILGL DSKLEKSLLI PFREVKVECT IPKDDGTLVS YVGFRIQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCNPR DLSISELERL TRVFTQKIHD LIGIQRDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGLGVV FATEALFAEY
201: GKSISDHTFI IQGFGNVGTW AAKSIFERGG KVIAVSDISG AIKNPNGIDI PALLKHKDGN GGVLKDFPGA EAMDPNELLL HECDVLIPCA LGGVLNKENA
301: VDVKAKFVIE AANHPTDPDA DEILSKKGVI ILPDIYANAG GVTVSYFEWV QNIQGFMWEE EKVNHELKKY MTRSFRDIKA MCKIHNCDLR MGAFTLGVNR
401: VARATLLRGW EA

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.