Factsheet for PGSC0003DMT400021509

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g094010.2.1	Tomato	unclear	99.03	99.03
PGSC0003DMT400041325	Potato	mitochondrion	91.0	91.0
CDY14044	Canola	mitochondrion	88.32	90.07
CDY55181	Canola	mitochondrion	88.32	90.07
Bra028697.1-P	Field mustard	mitochondrion	90.02	90.02
PGSC0003DMT400070951	Potato	mitochondrion	90.02	90.02
CDX70039	Canola	mitochondrion	86.62	88.34
CDY65233	Canola	mitochondrion	86.62	88.34
AT5G07440.1	Thale cress	mitochondrion	88.32	88.32
Bra009263.1-P	Field mustard	mitochondrion	88.32	88.32
CDX87065	Canola	cytosol, mitochondrion	48.66	88.11
CDX78292	Canola	mitochondrion	86.37	88.09
CDX81051	Canola	mitochondrion	86.37	88.09
Bra005935.1-P	Field mustard	mitochondrion	88.08	88.08
KRH77294	Soybean	mitochondrion	86.62	86.62
KRH04228	Soybean	mitochondrion	86.62	86.41
KRH57522	Soybean	mitochondrion	86.13	85.92
VIT_16s0039g02750.t01	Wine grape	cytosol	85.64	85.64
VIT_16s0039g02720.t01	Wine grape	mitochondrion	85.16	85.16
GSMUA_Achr2P10430_001	Banana	mitochondrion	82.97	82.97
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	82.73	82.73
TraesCS2B01G409300.1	Wheat	mitochondrion	82.0	82.0
TraesCS2A01G389900.1	Wheat	mitochondrion	81.75	81.75
Os02t0650900-01	Rice	mitochondrion	81.02	81.02
EES11206	Sorghum	mitochondrion	80.78	80.78
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	79.32	79.32
Zm00001d025984_P001	Maize	mitochondrion	78.83	78.83
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	49.15	76.23
TraesCS2D01G388800.1	Wheat	mitochondrion	82.0	75.56
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	63.26	63.11
PGSC0003DMT400017579	Potato	cytosol	25.55	16.91

Protein Annotations

EntrezGene:102599312	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639
GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH
UniProt:M1AF78	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	EnsemblPlantsGene:PGSC0003DMG400008344
PGSC:PGSC0003DMG400008344	EnsemblPlants:PGSC0003DMT400021509	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606
PANTHER:PTHR11606:SF24	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI000295A2F7	RefSeq:XP_006358191.1

Description

Glutamate dehydrogenase A [Source:PGSC_GENE;Acc:PGSC0003DMG400008344]

Coordinates

chr3:+:36909824..36913719

Molecular Weight (calculated)

44711.6 Da

IEP (calculated)

6.703

GRAVY (calculated)

-0.191

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRQAARILGL DSKIEKSLLI PFREIKVECT IPEDDGTLVS YVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCNPK DLSVSELERL TRVFTQKIHD LIGVNTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAIVTG KPIDLGGSLG REAATGRGVV YATEALLAEY
201: GKHVKDLTFA IQGFGNVGAW AGKLIHERGG KVVAVSDITG AVKNPNGLDI PALLSHKEKT GKLIDFAGAD VMNSDELLTH ECDVLIPCAL GGVLNRENAD
301: NVKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANAGG VTVSYFEWVQ NIQGFMWDEE KVNRELKKYM TRAFHNLKGM CHSHNCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.