Factsheet for PGSC0003DMT400017579

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g068210.2.1	Tomato	nucleus	98.39	96.37
VIT_09s0002g02530.t01	Wine grape	cytosol	86.96	85.04
KRH47165	Soybean	nucleus	84.86	82.73
KRH44203	Soybean	nucleus	84.7	82.57
CDY46542	Canola	cytosol	73.11	80.35
CDY52956	Canola	cytosol	73.11	80.35
CDY33875	Canola	cytosol	78.91	78.91
AT1G51720.1	Thale cress	cytosol	79.23	77.24
Bra018927.1-P	Field mustard	cytosol	78.58	76.97
CDY22863	Canola	cytosol	78.42	76.81
Bra014299.1-P	Field mustard	cytosol	78.58	75.42
KRH38711	Soybean	endoplasmic reticulum	22.71	74.6
CDY18551	Canola	cytosol	39.94	74.03
GSMUA_AchrUn_...	Banana	cytosol	52.33	72.54
GSMUA_Achr8P05390_001	Banana	cytosol	70.21	71.71
KRH09218	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.17	71.54
TraesCS3B01G227100.1	Wheat	cytosol	66.67	64.19
EES00914	Sorghum	cytosol	67.15	64.15
TraesCS3D01G206100.4	Wheat	cytosol	66.99	64.1
TraesCS3A01G202500.1	Wheat	cytosol	66.83	63.85
Os01t0558200-01	Rice	mitochondrion	68.44	61.86
Zm00001d044503_P004	Maize	cytosol	66.67	56.48
HORVU3Hr1G048870.1	Barley	plastid	67.15	54.37
PGSC0003DMT400041325	Potato	mitochondrion	17.55	26.52
PGSC0003DMT400021509	Potato	mitochondrion	16.91	25.55
PGSC0003DMT400070951	Potato	mitochondrion	16.43	24.82
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	16.26	24.57

Protein Annotations

Gene3D:1.10.285.10	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	UniProt:M1A946	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00208
PFAM:PF02812	EnsemblPlantsGene:PGSC0003DMG402006819	PGSC:PGSC0003DMG402006819	EnsemblPlants:PGSC0003DMT400017579	PRINTS:PR00082	PANTHER:PTHR43571
SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0002968E5F	SEG:seg	:

Description

Glutamate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG402006819]

Coordinates

chr1:-:64322046..64335874

Molecular Weight (calculated)

69394.6 Da

IEP (calculated)

7.105

GRAVY (calculated)

-0.450

Length

621 amino acids

Sequence
(BLAST)

001: MDDMNLIHQA QRHHLVVREI GEEIDLEIGP GDDDPSFSNN TLINVPPQES AAEDHDESKQ MMIHQASGGN QDLLKTQPAK KKKKVVKRWR EEWADTYKWA
101: YVDVKDGTAR IFCSVCREYG RKHRRNPYGN EGSRNMQMSA LEEHNNSLLH KEALRLQMAS KDKIVVDKPL YVKALMSKTA GSIIEAALKR DPHELEFIQS
201: VQEAIHALER VISKNSSYVS TMERLLEPER TIVFRVPWVD DRGETHVNRG FRVHFNQTLG PCRGGLRFHP SMNLSIAKFL SFGQTLKNAL SPYRLGGSSG
301: GSDFDPKSKS DGEVMRFCQS FMNELYRYLG PEKDLPSEEM GVGTREMGFL HGQYRRLAGH SQGSFTGPRV NWSGSSLRTE ATGYGLVFFA QLMLADMNKE
401: LKGLRCAVSG SGKIAMHVLE KLIAYGAVPI TVSDAKGYLV DDDGFDFLKI SFLRDIKAQQ RSLRDYSKTY ARSKYYDEAK PWSERFDVAF PCASQNEINQ
501: SDAINLVNSG CRILVEGSNM PCTAEAVDVL RKANVLVAPS MAAGVGGVVA GELELKECNL NWSPEDFESK LQEAMKQTYQ RALKAATDFG YQKESPEALV
601: HGAVISAFLT IASGMVDQGC V

Best Arabidopsis Sequence Match ( AT1G51720.1 )
(BLAST)

001: MFGPTGGLGM NPSMDDMNLI QQAQRHQLVV SNLGEEIDLE IGPGEDDAAF ANNSLIGGPP REPSTGEHDE TKHMVLVSDL PSEDQDISKG TPAKRKKKVV
101: KRWREEWADT YKWAYVDMKD GTARIFCSIC REYGRKHRRN PYGNEGSRNM QMSALEEHNN SLLHKEALRL QTASKDKIVV DKPIYVKTVM SKSAGSIVEG
201: ALKRDPNEIE FVQSVQESVH ALERVIAKNS HYVNIMERLL EPERMIVFRV PWIDDRGETH VNRGFRVQFN QALGPCRGGI RFHPSMNLSI AKFLGFQQTL
301: KNALSPYKLG GASGGSDFDP KGKSDNEIMR FCQSFMNEMY RYMGPDKDLP SEEVGVGTRE MGYLFGQYRR LAGQFQGSFT GPRIYWAASS LRTEASGYGV
401: VYFARLILAD MNKEIKGLRC VVSGCGKIAM HVVEKLIACG AHPVTVSDSK GYLVDDDGFD YMKLAFLRDI KSQQRSLRDY SKTYARAKYF DELKPWNERC
501: DVAFPCASQN EVDQADAINL VNAGCRLLVE GSNMPCTAEA VDVFRKANVL IAPAIAAGAG GVAAGEIEVL RESNSMQWSA EDFESRLQEA LKQTYEKALK
601: AANDFGYQKE SPEALLHGAT IAAFLNIAQA MTDQGCV

Arabidopsis Description

Amino acid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4I9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.