Factsheet for Solyc01g068210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017579	Potato	cytosol	96.37	98.39
VIT_09s0002g02530.t01	Wine grape	cytosol	86.59	86.46
KRH44203	Soybean	nucleus	84.07	83.67
KRH47165	Soybean	nucleus	83.91	83.52
CDY46542	Canola	cytosol	71.45	80.18
CDY52956	Canola	cytosol	71.45	80.18
CDY33875	Canola	cytosol	77.13	78.74
AT1G51720.1	Thale cress	cytosol	78.71	78.34
Bra018927.1-P	Field mustard	cytosol	77.92	77.92
CDY22863	Canola	cytosol	77.76	77.76
Bra014299.1-P	Field mustard	cytosol	77.6	76.04
CDY18551	Canola	cytosol	39.91	75.52
KRH38711	Soybean	endoplasmic reticulum	21.77	73.02
GSMUA_AchrUn_...	Banana	cytosol	51.26	72.54
GSMUA_Achr8P05390_001	Banana	cytosol	69.56	72.53
KRH09218	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	13.72	70.73
TraesCS3D01G206100.4	Wheat	cytosol	65.93	64.41
TraesCS3A01G202500.1	Wheat	cytosol	65.77	64.15
TraesCS3B01G227100.1	Wheat	cytosol	65.14	64.03
EES00914	Sorghum	cytosol	65.62	64.0
Os01t0558200-01	Rice	mitochondrion	66.88	61.72
Zm00001d044503_P004	Maize	cytosol	65.14	56.34
HORVU3Hr1G048870.1	Barley	plastid	66.09	54.63
Solyc05g052100.2.1	Tomato	unclear	17.19	26.39
Solyc03g094010.2.1	Tomato	unclear	16.72	25.79
Solyc06g033860.1.1	Tomato	unclear	16.56	25.55
Solyc10g078550.1.1	Tomato	extracellular	16.56	25.55

Protein Annotations

Gene3D:1.10.285.10	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0004354	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006520	GO:GO:0006537	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	UniProt:K4AX69
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00208	PFAM:PF02812	PRINTS:PR00082	PANTHER:PTHR43571	SMART:SM00839
SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:Solyc01g068210.2	EnsemblPlants:Solyc01g068210.2.1	UniParc:UPI0002763384	SEG:seg

Description

No Description!

Coordinates

chr1:+:77308690..77318691

Molecular Weight (calculated)

70667.2 Da

IEP (calculated)

7.100

GRAVY (calculated)

-0.437

Length

634 amino acids

Sequence
(BLAST)

001: MLLPTGGGGM NSTMDDMNLI HQAQRHHLVV REIGEEIDLE IGPGDDDPSF SNNTLINVPP QESTAEDHDE SKQMMIHQAS GGNQDLLKTQ PAKKKKKVVK
101: RWREEWADTY KWAYVDVKDG TARIFCSVCR EYGRKHRRNP YGNEGSRNMQ MSALEEHNNS LLHKEALRLQ MASKDKIVVD KPLYVKALMS KTAGSIIEAA
201: LKRDPHELEF IQYVQEAVHA LERVISKNSS YVSTMERLLE PERTIVFRVP WVDDRGETHV NRGFRVHFNQ TLGPCRGGLR FHPSMNLSIA KFLSFGQTLK
301: NALSPYRLGG SSGGSDFDPK SKSDGEVMRF CQSFMNELYR YLGPEKDLPS EEMGVGTREM GFLHGQYRRL AGHSQGTFTG PRVNWSGSSL RTEATGYGLV
401: FFAQLMLADM NKELKGLRCA VSGSGKIAMH VLEKLIAYGA VPITISDAKG YLVDDDGFDF LKISFLRDIK AQQRSLRDYS KTYARSKYYD EAKPWSERCD
501: VAFPCASQNE INQSDAINLV NSGCRILVEG SNMPCTAEAV DVLRKANVLV APSIAAGVGG VVAGELELKE CNLNWSPEDF ESKLQEAMKQ TYQRALKAAA
601: DFGYQKESPE ALVHGAVISA FITIANGMVD QGCV

Best Arabidopsis Sequence Match ( AT1G51720.1 )
(BLAST)

001: MFGPTGGLGM NPSMDDMNLI QQAQRHQLVV SNLGEEIDLE IGPGEDDAAF ANNSLIGGPP REPSTGEHDE TKHMVLVSDL PSEDQDISKG TPAKRKKKVV
101: KRWREEWADT YKWAYVDMKD GTARIFCSIC REYGRKHRRN PYGNEGSRNM QMSALEEHNN SLLHKEALRL QTASKDKIVV DKPIYVKTVM SKSAGSIVEG
201: ALKRDPNEIE FVQSVQESVH ALERVIAKNS HYVNIMERLL EPERMIVFRV PWIDDRGETH VNRGFRVQFN QALGPCRGGI RFHPSMNLSI AKFLGFQQTL
301: KNALSPYKLG GASGGSDFDP KGKSDNEIMR FCQSFMNEMY RYMGPDKDLP SEEVGVGTRE MGYLFGQYRR LAGQFQGSFT GPRIYWAASS LRTEASGYGV
401: VYFARLILAD MNKEIKGLRC VVSGCGKIAM HVVEKLIACG AHPVTVSDSK GYLVDDDGFD YMKLAFLRDI KSQQRSLRDY SKTYARAKYF DELKPWNERC
501: DVAFPCASQN EVDQADAINL VNAGCRLLVE GSNMPCTAEA VDVFRKANVL IAPAIAAGAG GVAAGEIEVL RESNSMQWSA EDFESRLQEA LKQTYEKALK
601: AANDFGYQKE SPEALLHGAT IAAFLNIAQA MTDQGCV

Arabidopsis Description

Amino acid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4I9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.