Factsheet for Solyc06g033860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070951	Potato	mitochondrion	97.57	97.57
Solyc03g094010.2.1	Tomato	unclear	88.08	88.08
CDY14044	Canola	mitochondrion	85.89	87.59
Bra028697.1-P	Field mustard	mitochondrion	87.35	87.35
CDY55181	Canola	mitochondrion	85.64	87.34
CDX81051	Canola	mitochondrion	85.16	86.85
Bra009263.1-P	Field mustard	mitochondrion	86.62	86.62
Bra005935.1-P	Field mustard	mitochondrion	86.62	86.62
CDX78292	Canola	mitochondrion	84.91	86.6
CDY65233	Canola	mitochondrion	84.91	86.6
AT5G07440.1	Thale cress	mitochondrion	86.37	86.37
CDX70039	Canola	mitochondrion	84.67	86.35
CDX87065	Canola	cytosol, mitochondrion	47.69	86.34
Solyc05g052100.2.1	Tomato	unclear	85.4	84.99
VIT_16s0039g02750.t01	Wine grape	cytosol	84.43	84.43
VIT_16s0039g02720.t01	Wine grape	mitochondrion	83.94	83.94
KRH77294	Soybean	mitochondrion	83.21	83.21
KRH04228	Soybean	mitochondrion	82.73	82.52
KRH57522	Soybean	mitochondrion	82.48	82.28
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	82.24	82.24
TraesCS2A01G389900.1	Wheat	mitochondrion	81.27	81.27
GSMUA_Achr2P10430_001	Banana	mitochondrion	81.27	81.27
TraesCS2B01G409300.1	Wheat	mitochondrion	81.02	81.02
EES11206	Sorghum	mitochondrion	80.29	80.29
Os02t0650900-01	Rice	mitochondrion	78.35	78.35
Zm00001d025984_P001	Maize	mitochondrion	78.35	78.35
Solyc10g078550.1.1	Tomato	extracellular	78.1	78.1
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	48.66	75.47
TraesCS2D01G388800.1	Wheat	mitochondrion	81.02	74.66
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	62.53	62.38
Solyc01g068210.2.1	Tomato	nucleus	25.55	16.56

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114
InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	UniProt:K4C4L0	InterPro:NAD(P)-bd_dom_sf
InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	PANTHER:PTHR11606
PANTHER:PTHR11606:SF24	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:Solyc06g033860.1	EnsemblPlants:Solyc06g033860.1.1
UniParc:UPI0002765952	:	:	:	:	:

Description

Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4C4L0]

Coordinates

chr6:+:23311507..23315504

Molecular Weight (calculated)

44762.0 Da

IEP (calculated)

7.126

GRAVY (calculated)

-0.144

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRKASRILGL DSKLEKSLLI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEIDHDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCIPK DLSISELERL TRVFTQKIHD LIGINTDVPA PDMGTNSQTM AWMLDEYSKF HGHSPAIVTG KPIDLGGSLG RDAATGRGVV YATGALLAEY
201: GKNIKDLTFV VQGFGNVGAW AAKLIHEKGG KVIVVSDITG AVKNPNGLDI AALMNYKEAT GTLTGFSGGD SMNSDELLTH KCDVLIPCAL GGVLNRENAE
301: HIKAKFIIEA ANHPTDPEAD EILCKKGVVI LPDIYANAGG VTVSYFEWVQ NIQGFMWNEE KVNMELEKYM TNAFHNLKNM CKTHNCNLRM GAFTLGVNRV
401: ARATMLRGWE A

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.