CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04228	Soybean	mitochondrion	93.92	93.69
KRH57522	Soybean	mitochondrion	92.94	92.72
Solyc03g094010.2.1	Tomato	unclear	87.1	87.1
Bra028697.1-P	Field mustard	mitochondrion	86.86	86.86
AT5G07440.1	Thale cress	mitochondrion	86.86	86.86
CDX81051	Canola	mitochondrion	85.16	86.85
CDY14044	Canola	mitochondrion	85.16	86.85
CDY55181	Canola	mitochondrion	85.16	86.85
CDY65233	Canola	mitochondrion	85.16	86.85
Bra005935.1-P	Field mustard	mitochondrion	86.62	86.62
PGSC0003DMT400021509	Potato	mitochondrion	86.62	86.62
Bra009263.1-P	Field mustard	mitochondrion	86.62	86.62
CDX78292	Canola	mitochondrion	84.91	86.6
CDX70039	Canola	mitochondrion	84.91	86.6
CDX87065	Canola	cytosol, mitochondrion	47.2	85.46
PGSC0003DMT400070951	Potato	mitochondrion	84.43	84.43
PGSC0003DMT400041325	Potato	mitochondrion	84.43	84.43
GSMUA_Achr2P10430_001	Banana	mitochondrion	83.7	83.7
Solyc05g052100.2.1	Tomato	unclear	83.7	83.29
Solyc06g033860.1.1	Tomato	unclear	83.21	83.21
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	82.97	82.97
TraesCS2B01G409300.1	Wheat	mitochondrion	82.73	82.73
TraesCS2A01G389900.1	Wheat	mitochondrion	82.24	82.24
EES11206	Sorghum	mitochondrion	81.02	81.02
Os02t0650900-01	Rice	mitochondrion	80.54	80.54
Zm00001d025984_P001	Maize	mitochondrion	80.05	80.05
VIT_00s1491g00010.t01	Wine grape	cytosol, mitochondrion	46.72	80.0
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	51.09	79.25
KRG94812	Soybean	cytosol, mitochondrion	78.83	78.83
KRH08494	Soybean	mitochondrion	78.59	78.59
KRH06711	Soybean	cytosol, mitochondrion	78.59	78.59
KRH70158	Soybean	extracellular, mitochondrion	78.35	78.35
TraesCS2D01G388800.1	Wheat	mitochondrion	82.73	76.23
VIT_00s0204g00160.t01	Wine grape	cytosol	16.79	73.4
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	29.93	69.89
KRG88968	Soybean	cytosol	35.28	68.72
KRH09218	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.27	27.64
KRH38711	Soybean	endoplasmic reticulum	9.98	21.69
KRH44203	Soybean	nucleus	26.28	16.95
KRH47165	Soybean	nucleus	25.79	16.64

Protein Annotations

EntrezGene:100801250	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EMBL:ACUP02000669	EnsemblPlantsGene:GLYMA_01G204600
GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C
InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	UniProt:I1J9Q7	EnsemblPlants:KRH77294	ProteinID:KRH77294	ProteinID:KRH77294.1
InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082
ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF24	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI0001CAB890	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:53735909..53739698

Molecular Weight (calculated)

44864.9 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.141

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRRAAHILGL DTKLENSLLI PFREIKVECT IPKDDGTLVS YVGFRIQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCNPR DLSVSELERL TRVFTQKIHD LIGIQRDVPA PDMGTNSQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGLGVI FATEALFAEY
201: GKSISDMTFV IQGFGNVGTW AAKSIYERGG KVIAVSDISG AIRNPNGIDI PALLKHKEGN GNLKEFSGAD IMDPDELLVH ECDVLIPCAL GGVLNKENAA
301: DVKAKFIIEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWDEE KVNRELKKYM TKAFRNIKAM CQIHNCDLRM GAFSLGVNRV
401: ARATLLRGWE A

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.