Factsheet for Os04t0543900-02

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, extracellular

Predictor Summary:

mitochondrion 9

Predictors

GFP

MS/MS

Papers

extracellular: 25047395
plastid: 27992503
plasma membrane: 28056797

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G409300.1	Wheat	mitochondrion	92.7	92.7
TraesCS2A01G389900.1	Wheat	mitochondrion	92.21	92.21
EES11206	Sorghum	mitochondrion	90.75	90.75
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	58.39	90.57
Zm00001d025984_P001	Maize	mitochondrion	88.81	88.81
GSMUA_Achr2P10430_001	Banana	mitochondrion	87.59	87.59
Os02t0650900-01	Rice	mitochondrion	87.35	87.35
TraesCS2D01G388800.1	Wheat	mitochondrion	92.7	85.43
PGSC0003DMT400070951	Potato	mitochondrion	83.45	83.45
KRH04228	Soybean	mitochondrion	83.45	83.25
Solyc03g094010.2.1	Tomato	unclear	82.97	82.97
KRH77294	Soybean	mitochondrion	82.97	82.97
KRH57522	Soybean	mitochondrion	82.97	82.77
PGSC0003DMT400021509	Potato	mitochondrion	82.73	82.73
VIT_16s0039g02750.t01	Wine grape	cytosol	82.24	82.24
Solyc06g033860.1.1	Tomato	unclear	82.24	82.24
Os03t0794500-01	Rice	mitochondrion	81.75	81.75
VIT_16s0039g02720.t01	Wine grape	mitochondrion	81.51	81.51
PGSC0003DMT400041325	Potato	mitochondrion	81.27	81.27
Solyc05g052100.2.1	Tomato	unclear	80.78	80.39
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	60.58	60.44
Os01t0358900-00	Rice	cytosol	12.9	47.32
Os01t0558200-01	Rice	mitochondrion	24.33	14.56

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EntrezGene:4336554	EMBL:AB189166	ProteinID:BAS90319.1
ProteinID:EEE61431.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004353	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006520	GO:GO:0006950	GO:GO:0006995
GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009605	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0009991	GO:GO:0010446	GO:GO:0016491	GO:GO:0016639
GO:GO:0055114	GO:GO:1901698	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH
InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	EnsemblPlantsGene:Os04g0543900	EnsemblPlants:Os04t0543900-02	PFAM:PF00208	PFAM:PF02812
PIRSF:PIRSF000185	PRINTS:PR00082	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	UniProt:Q33E23	SMART:SM00839
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00005E2BAA	RefSeq:XP_015637000.1	SEG:seg	:

Description

GLUTAMATE DEHYDROGENASE 2Similar to glutamic dehydrogenase1. (Os04t0543900-01);Similar to Glutamate dehydrogenase 2. (Os04t0543900-02)

Coordinates

chr4:+:27233575..27238105

Molecular Weight (calculated)

44553.5 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.165

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATSRN FRQAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAAIPYGG
101: AKGGIGCAPG ELSTSELERL TRVFTQKIHD LIGAHTDVPA PDMGTNSQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG RDAATGRGVM YATEALLAEH
201: GKSISGSTFV IQGFGNVGSW AARIIHEKGG KVIALGDVTG SIRNKNGLDI PALMKHRNEG GALKDFHDAE VMDSSELLVH ECDVLIPCAL GGVLNRENAP
301: DVKAKFIIEA ANHPTDPEAD EILAKKGVTI LPDIYANSGG VIVSYFEWVQ NIQGFMWDEE KVNMELHKYM NNSFQHIKAM CKSHDCNLRM GAFTLGVNRV
401: ARATLLRGWE A

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.