Factsheet for VIT_16s0039g02720.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g02750.t01	Wine grape	cytosol	96.84	96.84
Bra028697.1-P	Field mustard	mitochondrion	87.59	87.59
CDY14044	Canola	mitochondrion	85.64	87.34
CDY55181	Canola	mitochondrion	85.64	87.34
CDX81051	Canola	mitochondrion	84.43	86.1
CDX87065	Canola	cytosol, mitochondrion	47.45	85.9
Bra005935.1-P	Field mustard	mitochondrion	85.89	85.89
CDX78292	Canola	mitochondrion	84.18	85.86
Bra009263.1-P	Field mustard	mitochondrion	85.64	85.64
CDY65233	Canola	mitochondrion	83.94	85.61
PGSC0003DMT400070951	Potato	mitochondrion	85.4	85.4
AT5G07440.1	Thale cress	mitochondrion	85.4	85.4
CDX70039	Canola	mitochondrion	83.7	85.36
PGSC0003DMT400021509	Potato	mitochondrion	85.16	85.16
PGSC0003DMT400041325	Potato	mitochondrion	84.91	84.91
Solyc03g094010.2.1	Tomato	unclear	84.91	84.91
Solyc06g033860.1.1	Tomato	unclear	83.94	83.94
Solyc05g052100.2.1	Tomato	unclear	83.21	82.81
TraesCS2B01G409300.1	Wheat	mitochondrion	82.0	82.0
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	81.51	81.51
TraesCS2A01G389900.1	Wheat	mitochondrion	81.51	81.51
GSMUA_Achr2P10430_001	Banana	mitochondrion	81.27	81.27
EES11206	Sorghum	mitochondrion	80.54	80.54
Zm00001d025984_P001	Maize	mitochondrion	79.81	79.81
Os02t0650900-01	Rice	mitochondrion	78.83	78.83
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	50.12	77.74
VIT_00s1491g00010.t01	Wine grape	cytosol, mitochondrion	45.01	77.08
TraesCS2D01G388800.1	Wheat	mitochondrion	82.0	75.56
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	74.7	74.51
VIT_00s0204g00160.t01	Wine grape	cytosol	16.79	73.4
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	79.81	68.19
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	29.2	68.18
VIT_09s0002g02530.t01	Wine grape	cytosol	28.22	18.27

Protein Annotations

EntrezGene:100263048	wikigene:100263048	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EMBL:AM469596
ProteinID:CAN63801	ProteinID:CAN63801.1	ProteinID:CBI26583	ProteinID:CBI26583.3	UniProt:D7T7W2	EMBL:FN595750
GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C
InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	EntrezGene:LOC100263048	wikigene:LOC100263048	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH
PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606
PANTHER:PTHR11606:SF24	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00015C82E3	ArrayExpress:VIT_16s0039g02720
EnsemblPlantsGene:VIT_16s0039g02720	EnsemblPlants:VIT_16s0039g02720.t01	RefSeq:XP_002278888	RefSeq:XP_002278888.1	:	:

Description

Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D7T7W2]

Coordinates

chr16:-:3093771..3097237

Molecular Weight (calculated)

44880.9 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.163

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRHASRILGL DSKLEKSLLI SFREIKVECT IPKDDGSLAT YVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVVDIPYGG
101: AKGGIGCTPR DLSMSELERL TRVFTQKIHD LIGTHIDIPA PDMGTNAQTM AWIFDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGQGVV FATEALLAQH
201: GKSIKGLTFV IQGFGNVGSW VARLIHERGG KIIAVSDITG AVKNQNGLDI VDLLRHKEET GCLTNFSGGD HMDPNELLTH ECDVLIPCAL GGVLNKENAA
301: DVKAKFIIEA ANHPTDPEAD EILSKKGVVI LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNYELQKYM TKAFHNIKAM CQSHNCSLRM GAFTLGVKRV
401: ARATTLRGWE A

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.