Factsheet for VIT_16s0039g02750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 21379583

msms PMID: 21379583 doi

RG Sharathchandra, C Stander, D Jacobson, B Ndimba, MA Vivier

Department of Viticulture and Oenology, Institute for Wine Biotechnology, Stellenbosch University, Stellenbosch, South Africa.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g02720.t01	Wine grape	mitochondrion	96.84	96.84
Bra028697.1-P	Field mustard	mitochondrion	87.59	87.59
CDY55181	Canola	mitochondrion	85.64	87.34
CDY14044	Canola	mitochondrion	85.64	87.34
CDX87065	Canola	cytosol, mitochondrion	48.18	87.22
PGSC0003DMT400070951	Potato	mitochondrion	85.89	85.89
CDX81051	Canola	mitochondrion	84.18	85.86
Bra005935.1-P	Field mustard	mitochondrion	85.64	85.64
PGSC0003DMT400021509	Potato	mitochondrion	85.64	85.64
Bra009263.1-P	Field mustard	mitochondrion	85.64	85.64
CDY65233	Canola	mitochondrion	83.94	85.61
CDX78292	Canola	mitochondrion	83.94	85.61
AT5G07440.1	Thale cress	mitochondrion	85.4	85.4
Solyc03g094010.2.1	Tomato	unclear	85.4	85.4
PGSC0003DMT400041325	Potato	mitochondrion	85.4	85.4
CDX70039	Canola	mitochondrion	83.7	85.36
Solyc06g033860.1.1	Tomato	unclear	84.43	84.43
Solyc05g052100.2.1	Tomato	unclear	83.7	83.29
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	82.24	82.24
TraesCS2B01G409300.1	Wheat	mitochondrion	81.75	81.75
GSMUA_Achr2P10430_001	Banana	mitochondrion	81.51	81.51
EES11206	Sorghum	mitochondrion	81.51	81.51
TraesCS2A01G389900.1	Wheat	mitochondrion	81.27	81.27
Zm00001d025984_P001	Maize	mitochondrion	80.54	80.54
Os02t0650900-01	Rice	mitochondrion	79.81	79.81
VIT_00s1491g00010.t01	Wine grape	cytosol, mitochondrion	45.01	77.08
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	49.63	76.98
TraesCS2D01G388800.1	Wheat	mitochondrion	81.75	75.34
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	73.72	73.54
VIT_00s0204g00160.t01	Wine grape	cytosol	16.55	72.34
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	80.54	68.81
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	29.44	68.75
VIT_09s0002g02530.t01	Wine grape	cytosol	28.71	18.58

Protein Annotations

EntrezGene:100257914	wikigene:100257914	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EMBL:AJ303070
EMBL:AM430819	ProteinID:CAA60507	ProteinID:CAA60507.1	ProteinID:CAC18730	ProteinID:CAC18730.1	ProteinID:CAN69242
ProteinID:CAN69242.1	ProteinID:CBI26589	ProteinID:CBI26589.3	EMBL:FN595750	EntrezGene:GDH	wikigene:GDH
GO:GO:0003674	GO:GO:0003824	GO:GO:0004353	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS
InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208
PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF24
UniProt:Q9FES0	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	TIGR:TC51697	UniParc:UPI000009EF9C
ArrayExpress:VIT_16s0039g02750	EnsemblPlantsGene:VIT_16s0039g02750	EnsemblPlants:VIT_16s0039g02750.t01	unigene:Vvi.123	EMBL:X86924	:

Description

Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:Q9FES0]

Coordinates

chr16:-:3124114..3127269

Molecular Weight (calculated)

44590.6 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.140

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRHASRILGL DSKLEKSLLI PFREIKVECT IPKDDGSLAT YVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVVDIPYGG
101: AKGGIGCTPK DLSMSELERL TRVFTQKIHD LIGTHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIALGGSLG REAATGRGVV FATEALLAQH
201: GKSIKGLTFV IQGFGNVGSW VARLIGERGG KIIAVSDVTG AVKNQNGLDI VDLLRHKEET GCLTNFSGGD HMDPNELLTH ECDVLIPCAL GGVLNKENAA
301: DVKAKFIIEA ANHPTDPEAD EILSKKGVVI LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNNELQKYM TKAFHNIKAM CQSHNCSLRM GAFTLAVNRV
401: ACATTLRGWE A

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.