Factsheet for Bra005935.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78292	Canola	mitochondrion	97.81	99.75
CDX81051	Canola	mitochondrion	97.57	99.5
Bra009263.1-P	Field mustard	mitochondrion	96.84	96.84
AT5G07440.1	Thale cress	mitochondrion	96.59	96.59
Bra028697.1-P	Field mustard	mitochondrion	95.38	95.38
Solyc03g094010.2.1	Tomato	unclear	88.08	88.08
PGSC0003DMT400021509	Potato	mitochondrion	88.08	88.08
PGSC0003DMT400041325	Potato	mitochondrion	87.1	87.1
PGSC0003DMT400070951	Potato	mitochondrion	86.86	86.86
Solyc06g033860.1.1	Tomato	unclear	86.62	86.62
KRH77294	Soybean	mitochondrion	86.62	86.62
KRH57522	Soybean	mitochondrion	86.13	85.92
VIT_16s0039g02720.t01	Wine grape	mitochondrion	85.89	85.89
KRH04228	Soybean	mitochondrion	85.89	85.68
VIT_16s0039g02750.t01	Wine grape	cytosol	85.64	85.64
Solyc05g052100.2.1	Tomato	unclear	85.16	84.75
GSMUA_Achr2P10430_001	Banana	mitochondrion	83.45	83.45
TraesCS2B01G409300.1	Wheat	mitochondrion	82.24	82.24
TraesCS2A01G389900.1	Wheat	mitochondrion	81.75	81.75
EES11206	Sorghum	mitochondrion	81.27	81.27
Zm00001d025984_P001	Maize	mitochondrion	79.32	79.32
Bra036428.1-P	Field mustard	cytosol, mitochondrion	79.32	79.32
Bra002139.1-P	Field mustard	mitochondrion	78.59	78.59
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	50.37	78.11
VIT_00s1491g00010.t01	Wine grape	cytosol, mitochondrion	45.01	77.08
TraesCS2D01G388800.1	Wheat	mitochondrion	82.24	75.78
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	30.17	70.45
VIT_00s0204g00160.t01	Wine grape	cytosol	16.06	70.21
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	63.99	63.84
Bra031964.1-P	Field mustard	mitochondrion	69.83	50.71
Bra018927.1-P	Field mustard	cytosol	26.76	17.35
Bra014299.1-P	Field mustard	cytosol	26.52	16.85

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EnsemblPlantsGene:Bra005935	EnsemblPlants:Bra005935.1	EnsemblPlants:Bra005935.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C
InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	UniProt:M4CNZ7	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208
PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF24
SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI000253F6C0	:	:

Description

AT5G07440 (E=6e-237) GDH2 | GDH2 (GLUTAMATE DEHYDROGENASE 2); ATP binding / glutamate dehydrogenase [NAD(P)+]/ glutamate dehydrogenase/ oxidoreductase

Coordinates

chrA03:+:1307329..1309256

Molecular Weight (calculated)

44681.5 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.168

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIEKSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN SRGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV YATEALLAEY
201: GKSIQGLTFV VQGFGNVGTW AAKLNHEKGG KVVAVSDITG AVRNPEGIDI NALLKHKEAT GSLNEFTGGD AMDSDELLLH ECDVLIPCAL GGVLNKENAA
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVSRV
401: ARATQLRGWE A

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.