Factsheet for Bra002139.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38492	Canola	mitochondrion	99.76	99.76
AT5G18170.1	Thale cress	cytosol, mitochondrion	95.38	95.38
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	91.24	91.24
Bra036428.1-P	Field mustard	cytosol, mitochondrion	91.0	91.0
Solyc10g078550.1.1	Tomato	extracellular	90.27	90.27
KRH06711	Soybean	cytosol, mitochondrion	89.54	89.54
KRG94812	Soybean	cytosol, mitochondrion	89.29	89.29
KRH70158	Soybean	extracellular, mitochondrion	88.08	88.08
KRH08494	Soybean	mitochondrion	87.59	87.59
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	85.16	85.16
HORVU4Hr1G061100.1	Barley	cytosol	15.33	85.14
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	84.91	84.91
Os03t0794500-01	Rice	mitochondrion	84.43	84.43
OQU90838	Sorghum	cytosol, mitochondrion	83.21	83.21
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	82.97	82.97
KRG88968	Soybean	cytosol	41.12	80.09
Bra009263.1-P	Field mustard	mitochondrion	79.81	79.81
Bra028697.1-P	Field mustard	mitochondrion	79.56	79.56
Bra005935.1-P	Field mustard	mitochondrion	78.59	78.59
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	90.51	77.34
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	82.97	74.78
TraesCS5B01G437100.2	Wheat	extracellular	82.73	74.4
TraesCS7D01G412300.1	Wheat	cytosol	26.76	65.09
TraesCS1B01G166200.2	Wheat	cytosol	20.44	62.69
Bra031964.1-P	Field mustard	mitochondrion	81.51	59.19
TraesCS1D01G322800.1	Wheat	cytosol	9.98	54.67
TraesCS5D01G021500.1	Wheat	cytosol	17.76	54.07
TraesCS1D01G080500.1	Wheat	cytosol	13.38	50.93
TraesCS6D01G031800.1	Wheat	cytosol	13.14	50.0
TraesCS1B01G472700.1	Wheat	cytosol	16.3	49.63
Zm00001d016419_P001	Maize	mitochondrion, plastid	19.71	37.33
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.95	35.43
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	20.44	26.84
Bra018927.1-P	Field mustard	cytosol	25.55	16.56
Bra014299.1-P	Field mustard	cytosol	25.3	16.07

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EnsemblPlantsGene:Bra002139	EnsemblPlants:Bra002139.1	EnsemblPlants:Bra002139.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004353	GO:GO:0005488	GO:GO:0005507
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006520	GO:GO:0006807	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009628	GO:GO:0009646	GO:GO:0009651	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639
GO:GO:0046686	GO:GO:0050897	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C
InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	UniProt:M4CD58	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208
PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18
SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0002543957	:	:

Description

AT5G18170 (E=9e-233) GDH1 | GDH1 (GLUTAMATE DEHYDROGENASE 1); ATP binding / glutamate dehydrogenase [NAD(P)+]/ oxidoreductase

Coordinates

chrA10:-:11302229..11304264

Molecular Weight (calculated)

44641.6 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.188

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTIAS FVGFRVQHDN ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKSISGQRFV IQGFGNVGSW AAKLISEQGG KIVAVSDITG AIKNKDGIDI ESLLNYTKEH RGVKGFDGAH PIDANSILVE DCDILIPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM NRGFKDMKEM CKTHSCDLRM GAFTLGVNRV
401: ARATVLRGWG A

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.