CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

mitochondrion 9

Predictors

GFP

MS/MS

Papers

extracellular: 25724908

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08494	Soybean	mitochondrion	96.11	96.11
KRG94812	Soybean	cytosol, mitochondrion	92.46	92.46
KRH06711	Soybean	cytosol, mitochondrion	92.21	92.21
Bra002139.1-P	Field mustard	mitochondrion	88.08	88.08
CDY25453	Canola	cytosol, mitochondrion	88.08	88.08
CDY38492	Canola	mitochondrion	87.83	87.83
AT5G18170.1	Thale cress	cytosol, mitochondrion	87.59	87.59
AT3G03910.1	Thale cress	cytosol, mitochondrion	87.35	87.35
CDY29969	Canola	cytosol, mitochondrion	86.86	86.86
CDY21157	Canola	cytosol, mitochondrion	86.86	86.86
Bra036428.1-P	Field mustard	cytosol, mitochondrion	86.86	86.86
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	86.62	86.62
Solyc10g078550.1.1	Tomato	extracellular	86.37	86.37
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	84.67	84.67
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	84.43	84.43
Os03t0794500-01	Rice	mitochondrion	84.18	84.18
OQU90838	Sorghum	cytosol, mitochondrion	83.21	83.21
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	82.24	82.24
Zm00001d034420_P002	Maize	plasma membrane	82.24	82.24
KRG88968	Soybean	cytosol	41.85	81.52
HORVU4Hr1G061100.1	Barley	cytosol	14.6	81.08
KRH04228	Soybean	mitochondrion	80.05	79.85
KRH57522	Soybean	mitochondrion	79.32	79.13
KRH77294	Soybean	mitochondrion	78.35	78.35
CDY64896	Canola	mitochondrion	85.4	76.81
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	37.71	76.35
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	89.05	76.09
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	82.24	74.12
TraesCS5B01G437100.2	Wheat	extracellular	82.0	73.74
TraesCS7D01G412300.1	Wheat	cytosol	27.98	68.05
TraesCS1B01G166200.2	Wheat	cytosol	21.17	64.93
Bra031964.1-P	Field mustard	mitochondrion	77.62	56.36
TraesCS1D01G322800.1	Wheat	cytosol	10.22	56.0
TraesCS5D01G021500.1	Wheat	cytosol	17.76	54.07
CDY50862	Canola	cytosol, mitochondrion, plastid	84.91	53.53
TraesCS1D01G080500.1	Wheat	cytosol	13.87	52.78
TraesCS1B01G472700.1	Wheat	cytosol	17.03	51.85
TraesCS6D01G031800.1	Wheat	cytosol	13.38	50.93
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.19	36.22
KRH09218	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.52	28.46
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	20.68	27.16
KRH38711	Soybean	endoplasmic reticulum	10.95	23.81
KRH44203	Soybean	nucleus	27.74	17.9
KRH47165	Soybean	nucleus	27.25	17.58

Protein Annotations

EntrezGene:100801991	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EMBL:ACUP02000753	EnsemblPlantsGene:GLYMA_02G072200
GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C
InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	UniProt:I1JD54	EnsemblPlants:KRH70158	ProteinID:KRH70158	ProteinID:KRH70158.1
InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082
ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI0002337326	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:6327836..6332139

Molecular Weight (calculated)

44449.4 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.168

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGSLAT FVGFRVQHDN ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCDPA KLSVSELERL TRVFTQKIHD LIGVQTDVPA PDMGTGPQTM AWILDEYSKF HGHSPAVVTG KPIELGGSLG RDAATGRGVL FATEALLKEH
201: GMSLSGQRLV IQGFGNVGSW AAKLISEKGG KVVAVSDITG AIKNSNGLDI PSLLKYSEQH QGVKGFHGGE AIDPNSILVE DCDVLVPAAL GGVINRENAN
301: EIKAKFVVEA ANHPTDPEAD EILKKKGVVI LPDIFANSGG VTVSYFEWVQ NIQGFMWDEE KVNNELKTYM TKGFKDVKEM CKTHNCDLRM GAFTLAVNRV
401: ARATTLRGWE A

Best Arabidopsis Sequence Match ( AT3G03910.1 )
(BLAST)

001: MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS ELSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG RDAATGRGVL FATEALLNEH
201: GKTISGQRFA IQGFGNVGSW AAKLISDKGG KIVAVSDVTG AIKNNNGIDI LSLLEHAEEN RGIKGFDGAD SIDPDSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEG ANHPTDPEAD EILKKKGVMI LPDIYANSGG VTVSYFEWVQ NIQGFMWDEE KVNRELKTYM TRGFKDLKEM CQTHSCDLRM GAFTLGINRV
401: AQATTIRGWG S

Arabidopsis Description

GSH3Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178VBI2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.