Factsheet for Solyc10g078550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

extracellular: 20496099
extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	98.78	98.78
HORVU4Hr1G061100.1	Barley	cytosol	16.3	90.54
CDY25453	Canola	cytosol, mitochondrion	90.51	90.51
Bra002139.1-P	Field mustard	mitochondrion	90.27	90.27
CDY38492	Canola	mitochondrion	90.02	90.02
AT5G18170.1	Thale cress	cytosol, mitochondrion	89.54	89.54
KRH06711	Soybean	cytosol, mitochondrion	88.32	88.32
KRG94812	Soybean	cytosol, mitochondrion	88.32	88.32
Os03t0794500-01	Rice	mitochondrion	88.08	88.08
OQU90838	Sorghum	cytosol, mitochondrion	87.59	87.59
KRH08494	Soybean	mitochondrion	87.35	87.35
Zm00001d034420_P002	Maize	plasma membrane	87.1	87.1
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	87.1	87.1
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	86.86	86.86
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	86.62	86.62
CDY21157	Canola	cytosol, mitochondrion	86.62	86.62
Bra036428.1-P	Field mustard	cytosol, mitochondrion	86.62	86.62
CDY29969	Canola	cytosol, mitochondrion	86.37	86.37
KRH70158	Soybean	extracellular, mitochondrion	86.37	86.37
AT3G03910.1	Thale cress	cytosol, mitochondrion	86.37	86.37
Solyc03g094010.2.1	Tomato	unclear	79.81	79.81
KRG88968	Soybean	cytosol	40.88	79.62
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	87.1	78.51
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	38.69	78.33
TraesCS5B01G437100.2	Wheat	extracellular	86.86	78.12
Solyc06g033860.1.1	Tomato	unclear	78.1	78.1
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	90.75	77.55
Solyc05g052100.2.1	Tomato	unclear	77.62	77.24
CDY64896	Canola	mitochondrion	85.64	77.02
TraesCS7D01G412300.1	Wheat	cytosol	28.47	69.23
TraesCS1B01G166200.2	Wheat	cytosol	21.17	64.93
TraesCS1D01G322800.1	Wheat	cytosol	11.19	61.33
Bra031964.1-P	Field mustard	mitochondrion	78.35	56.89
TraesCS5D01G021500.1	Wheat	cytosol	18.0	54.81
CDY50862	Canola	cytosol, mitochondrion, plastid	85.89	54.14
TraesCS1D01G080500.1	Wheat	cytosol	14.11	53.7
TraesCS1B01G472700.1	Wheat	cytosol	17.52	53.33
TraesCS6D01G031800.1	Wheat	cytosol	13.87	52.78
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.44	37.01
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	21.9	28.75
Solyc01g068210.2.1	Tomato	nucleus	25.55	16.56

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0004353
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639
GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH
UniProt:K4D297	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185
PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735
SUPFAM:SSF53223	EnsemblPlantsGene:Solyc10g078550.1	EnsemblPlants:Solyc10g078550.1.1	UniParc:UPI00000A49EF	SEG:seg	:

Description

Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4D297]

Coordinates

chr10:-:60340819..60343861

Molecular Weight (calculated)

44623.5 Da

IEP (calculated)

6.651

GRAVY (calculated)

-0.181

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLELSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCSPS DLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTNPQTM AWILDEYSKF HGYSPAVVTG KPVDLGGSLG RDAATGRGAL FATEALLNEH
201: GKSVAGQRFV IQGFGNVGSW AAKLIHEQGG KVVAVSDITG AIKNEKGIDI ESLFKHVKET RGVKGFHDAH PIDANSILVE DCDVLIPAAL GGVINKDNAN
301: EIKAKYIIEA ANHPTDPEAD EILSKKGVTI LPDIYANSGG VTVSYFEWVQ NIQGFMWDEK KVNDELKTYM TRGFKDVKDM CKTHNCDLRM GAFTLGVNRV
401: ARATVLRGWE A

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.