Factsheet for TraesCS5D01G442000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 19786127
plastid: 22736107
mitochondrion: 23895732
unclear: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 23895732 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks (CABiN), M316, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	90.13	100.0
Os03t0794500-01	Rice	mitochondrion	87.28	96.84
OQU90838	Sorghum	cytosol, mitochondrion	85.75	95.13
Zm00001d034420_P002	Maize	plasma membrane	85.31	94.65
HORVU4Hr1G061100.1	Barley	cytosol	15.13	93.24
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	80.92	89.78
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	80.7	89.54
Solyc10g078550.1.1	Tomato	extracellular	78.51	87.1
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	78.51	87.1
TraesCS7D01G412300.1	Wheat	cytosol	32.24	86.98
TraesCS1D01G322800.1	Wheat	cytosol	14.04	85.33
KRG94812	Soybean	cytosol, mitochondrion	76.32	84.67
KRH06711	Soybean	cytosol, mitochondrion	76.1	84.43
AT5G18170.1	Thale cress	cytosol, mitochondrion	76.1	84.43
CDY21157	Canola	cytosol, mitochondrion	75.66	83.94
Bra036428.1-P	Field mustard	cytosol, mitochondrion	75.66	83.94
CDY29969	Canola	cytosol, mitochondrion	75.66	83.94
AT3G03910.1	Thale cress	cytosol, mitochondrion	75.66	83.94
KRH08494	Soybean	mitochondrion	75.22	83.45
CDY25453	Canola	cytosol, mitochondrion	75.22	83.45
Bra002139.1-P	Field mustard	mitochondrion	74.78	82.97
CDY38492	Canola	mitochondrion	74.56	82.73
KRH70158	Soybean	extracellular, mitochondrion	74.12	82.24
KRG88968	Soybean	cytosol	35.09	75.83
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	33.55	75.37
CDY64896	Canola	mitochondrion	75.22	75.05
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	79.17	75.05
TraesCS2D01G388800.1	Wheat	mitochondrion	72.37	73.99
TraesCS1D01G080500.1	Wheat	cytosol	17.32	73.15
TraesCS6D01G031800.1	Wheat	cytosol	16.89	71.3
TraesCS5D01G021500.1	Wheat	cytosol	19.3	65.19
Bra031964.1-P	Field mustard	mitochondrion	67.76	54.59
CDY50862	Canola	cytosol, mitochondrion, plastid	74.12	51.84
TraesCS3D01G206100.4	Wheat	cytosol	22.59	15.87

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114
InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	InterPro:NAD(P)-bd_dom_sf
InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074
PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	SignalP:SignalP-noTM
EnsemblPlantsGene:TraesCS5D01G442000	EnsemblPlants:TraesCS5D01G442000.1	TIGR:cd01076	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:494216457..494219679

Molecular Weight (calculated)

48995.9 Da

IEP (calculated)

8.150

GRAVY (calculated)

-0.140

Length

456 amino acids

Sequence
(BLAST)

001: MHTAYLKLLH SLCAAASPLL SPLTTLRRYS ARRRGGSGGG ISSSRMNALA ATSRNFKQAA KLLGLDSKLE KSLLIPFREI KVECTIPKDD GTLASYVGFR
101: VQHDNARGPM KGGIRYHHEV DPDEVNALAQ LMTWKTAVAN IPYGGAKGGI GCSPGDLSIS ELERLTRVFT QKIHDLIGIH TDVPAPDMGT NAQTMAWILD
201: EYSKFHGYSP AVVTGKPVDL GGSLGRDAAT GRGVLFATEA LLAEHGKGIA GQRFVIQGFG NVGSWAAQLI TEAGGKVIAI SDVTGAVKNS NGIDIAKLMK
301: HSAENRGIKG FDGGDAVDPT SLLTEECDVL IPAALGGVIN KDNADAIKAK YIIEAANHPT DPEADEILAK KGVLILPDIL ANSGGVTVSY FEWVQNIQGF
401: MWDEEKVNRE LKTYMTRAFR DTKEMCRSHH CDLRMGAFTL GVNRVARATV LRGWEA

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.