CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94812	Soybean	cytosol, mitochondrion	98.54	98.54
KRH08494	Soybean	mitochondrion	92.94	92.94
KRH70158	Soybean	extracellular, mitochondrion	92.21	92.21
AT5G18170.1	Thale cress	cytosol, mitochondrion	90.27	90.27
CDY25453	Canola	cytosol, mitochondrion	90.02	90.02
KRG88968	Soybean	cytosol	45.99	89.57
Bra002139.1-P	Field mustard	mitochondrion	89.54	89.54
CDY38492	Canola	mitochondrion	89.29	89.29
CDY21157	Canola	cytosol, mitochondrion	89.05	89.05
Bra036428.1-P	Field mustard	cytosol, mitochondrion	89.05	89.05
AT3G03910.1	Thale cress	cytosol, mitochondrion	89.05	89.05
CDY29969	Canola	cytosol, mitochondrion	88.81	88.81
Solyc10g078550.1.1	Tomato	extracellular	88.32	88.32
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	88.32	88.32
Os03t0794500-01	Rice	mitochondrion	86.62	86.62
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	86.13	86.13
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	85.4	85.4
OQU90838	Sorghum	cytosol, mitochondrion	85.4	85.4
HORVU4Hr1G061100.1	Barley	cytosol	15.33	85.14
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	84.43	84.43
Zm00001d034420_P002	Maize	plasma membrane	84.18	84.18
KRH04228	Soybean	mitochondrion	80.29	80.1
KRH57522	Soybean	mitochondrion	79.32	79.13
KRH77294	Soybean	mitochondrion	78.59	78.59
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	91.73	78.38
CDY64896	Canola	mitochondrion	86.62	77.9
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	37.96	76.85
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	84.43	76.1
TraesCS5B01G437100.2	Wheat	extracellular	84.18	75.71
TraesCS7D01G412300.1	Wheat	cytosol	28.47	69.23
TraesCS1B01G166200.2	Wheat	cytosol	21.17	64.93
TraesCS1D01G322800.1	Wheat	cytosol	10.46	57.33
Bra031964.1-P	Field mustard	mitochondrion	78.83	57.24
TraesCS5D01G021500.1	Wheat	cytosol	18.25	55.56
CDY50862	Canola	cytosol, mitochondrion, plastid	86.13	54.29
TraesCS1D01G080500.1	Wheat	cytosol	14.11	53.7
TraesCS6D01G031800.1	Wheat	cytosol	13.63	51.85
TraesCS1B01G472700.1	Wheat	cytosol	16.79	51.11
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.44	37.01
KRH09218	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.27	27.64
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	20.92	27.48
KRH38711	Soybean	endoplasmic reticulum	11.19	24.34
KRH44203	Soybean	nucleus	27.74	17.9
KRH47165	Soybean	nucleus	27.25	17.58

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EntrezGene:547687	EMBL:ACUP02009864	EMBL:AJ879895
EnsemblPlantsGene:GLYMA_16G041200	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS
InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	ProteinID:KRH06710.1	EnsemblPlants:KRH06711	ProteinID:KRH06711
ProteinID:KRH06711.1	ProteinID:KRH06712.1	ProteinID:KRH06713.1	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208
PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18
UniProt:Q5F2M9	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00004CC7C5	:

Description

hypothetical protein

Coordinates

chr16:+:3861427..3869280

Molecular Weight (calculated)

44551.4 Da

IEP (calculated)

6.430

GRAVY (calculated)

-0.189

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLQS YVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCDPA ELSISELERL TRVFTQKIHD LIGTHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVL FATEALLNEY
201: GKSVSGQRFV IQGFGNVGSW AAQLISNKGG KVVAVSDITG AIKNSNGLDI PSLLEHSKVH RGVKGFNGSD PIDPNSILVE DCDVLVPAAL GGVINRENAN
301: EIKAKFIVEA ANHPTDPEAD EILKKKGVVI LPDIFANSGG VTVSYFEWVQ NIQGFMWDEE KVNNELKTYM TKGFKDVKEM CKTHECDLRM GAFTLAVNRV
401: ARATVLRGWE A

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.