CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57522	Soybean	mitochondrion	96.12	96.12
KRH77294	Soybean	mitochondrion	93.69	93.92
Solyc03g094010.2.1	Tomato	unclear	87.14	87.35
AT5G07440.1	Thale cress	mitochondrion	86.65	86.86
CDX87065	Canola	cytosol, mitochondrion	47.82	86.78
Bra009263.1-P	Field mustard	mitochondrion	86.41	86.62
PGSC0003DMT400021509	Potato	mitochondrion	86.41	86.62
CDX70039	Canola	mitochondrion	84.71	86.6
CDY65233	Canola	mitochondrion	84.71	86.6
Bra028697.1-P	Field mustard	mitochondrion	86.17	86.37
CDY14044	Canola	mitochondrion	84.47	86.35
CDY55181	Canola	mitochondrion	84.47	86.35
Bra005935.1-P	Field mustard	mitochondrion	85.68	85.89
CDX81051	Canola	mitochondrion	83.98	85.86
CDX78292	Canola	mitochondrion	83.98	85.86
PGSC0003DMT400070951	Potato	mitochondrion	83.74	83.94
PGSC0003DMT400041325	Potato	mitochondrion	83.74	83.94
GSMUA_Achr2P10430_001	Banana	mitochondrion	83.25	83.45
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	83.25	83.45
TraesCS2B01G409300.1	Wheat	mitochondrion	83.01	83.21
Solyc05g052100.2.1	Tomato	unclear	83.01	82.81
TraesCS2A01G389900.1	Wheat	mitochondrion	82.52	82.73
Solyc06g033860.1.1	Tomato	unclear	82.52	82.73
EES11206	Sorghum	mitochondrion	82.28	82.48
Os02t0650900-01	Rice	mitochondrion	81.31	81.51
Zm00001d025984_P001	Maize	mitochondrion	80.83	81.02
KRG94812	Soybean	cytosol, mitochondrion	80.34	80.54
KRH06711	Soybean	cytosol, mitochondrion	80.1	80.29
KRH70158	Soybean	extracellular, mitochondrion	79.85	80.05
KRH08494	Soybean	mitochondrion	79.85	80.05
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	51.46	80.0
VIT_00s1491g00010.t01	Wine grape	cytosol, mitochondrion	46.12	79.17
TraesCS2D01G388800.1	Wheat	mitochondrion	83.01	76.68
VIT_00s0204g00160.t01	Wine grape	cytosol	16.75	73.4
KRG88968	Soybean	cytosol	35.68	69.67
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	28.16	65.91
KRH09218	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.5	28.46
KRH38711	Soybean	endoplasmic reticulum	9.95	21.69
KRH44203	Soybean	nucleus	26.46	17.11
KRH47165	Soybean	nucleus	25.97	16.8

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EMBL:ACUP02010392	EnsemblPlantsGene:GLYMA_17G148000	GO:GO:0003674
GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom
InterPro:Glu_DH	UniProt:I1MV76	EnsemblPlants:KRH04228	ProteinID:KRH04228	ProteinID:KRH04228.1	InterPro:NAD(P)-bd_dom_sf
InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074
PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI000295CEC0

Description

hypothetical protein

Coordinates

chr17:-:12197282..12201307

Molecular Weight (calculated)

44716.9 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.094

Length

412 amino acids

Sequence
(BLAST)

001: MNALAATNRN FQRAARILGL DSKLEKSLLI PFREIKVECT IPKDDGTLVS YVGFRIQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCNPR DLSISELERL TRVFTQKIHD LIGVQRDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGLGVV FATEALFAEY
201: GKSISDHTFV IQGFGNVGTW AAKSIFERGG KVIAVSDISG AIKNLNGIDI LALLKHKDGN GGVLKDFPGA EAMDPDELLV HECDVLVPCA LGGVLNKENA
301: ADVKAKFIIE AANHPTDPDA DGILSKKGVI ILPDIYANAG GVTVSYFEWV QNIQGFMWDE EKVNRELKKY MTKAFQDIKA MCKIHNCDLR MGAFTLGVNR
401: VARATLLRGW EA

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.