Factsheet for VIT_00s1491g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0204g00160.t01	Wine grape	cytosol	36.25	92.55
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	41.25	56.25
CDX87065	Canola	cytosol, mitochondrion	49.58	52.42
KRH77294	Soybean	mitochondrion	80.0	46.72
CDY14044	Canola	mitochondrion	77.92	46.4
CDY55181	Canola	mitochondrion	77.92	46.4
KRH57522	Soybean	mitochondrion	79.58	46.36
CDX70039	Canola	mitochondrion	77.5	46.15
CDY65233	Canola	mitochondrion	77.5	46.15
KRH04228	Soybean	mitochondrion	79.17	46.12
CDX78292	Canola	mitochondrion	77.08	45.91
CDX81051	Canola	mitochondrion	77.08	45.91
AT5G07440.1	Thale cress	mitochondrion	77.92	45.5
Bra028697.1-P	Field mustard	mitochondrion	77.5	45.26
Bra009263.1-P	Field mustard	mitochondrion	77.5	45.26
VIT_16s0039g02750.t01	Wine grape	cytosol	77.08	45.01
VIT_16s0039g02720.t01	Wine grape	mitochondrion	77.08	45.01
Bra005935.1-P	Field mustard	mitochondrion	77.08	45.01
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	75.83	37.84
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	48.75	28.4
VIT_09s0002g02530.t01	Wine grape	cytosol	25.0	9.45

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	ProteinID:CCB62952	ProteinID:CCB62952.1	UniProt:F6I7N3
EMBL:FN596856	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00208	PFAM:PF02812	PRINTS:PR00082	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18
SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0002108F14	ArrayExpress:VIT_00s1491g00010	EnsemblPlantsGene:VIT_00s1491g00010
EnsemblPlants:VIT_00s1491g00010.t01	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:39304029..39305415

Molecular Weight (calculated)

26374.8 Da

IEP (calculated)

6.154

GRAVY (calculated)

-0.076

Length

240 amino acids

Sequence
(BLAST)

001: VDPDEVNALA QLMTWKTAVA NIPYGGAKGG IGCRPSEMST NELERLTGVF TQKIHDLIGI HSDVPAPDMG TNSQTMAWIL DEYSKFHGHS PAVVTGKPID
101: LGGSLGRESA TGLGVVFGTE ALLAEYGKLI SDMKFVIQIM IFLVSILWTR MTCLDNAAHV KAKFIIEAAN HPTDPEADEN IQGFMWDEEK VNHELQKYMR
201: RSFLDVKAMC QTLNCSLRMG SFTSGVNRVA RATLLRGWQA

Best Arabidopsis Sequence Match ( AT5G07440.3 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKSVQK
301: LHSSNQHQS

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.