Factsheet for VIT_16s0039g02740.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g02720.t01	Wine grape	mitochondrion	74.51	74.7
VIT_16s0039g02750.t01	Wine grape	cytosol	73.54	73.72
VIT_00s0204g00150.t01	Wine grape	cytosol, mitochondrion, plastid	29.13	68.18
CDX87065	Canola	cytosol, mitochondrion	37.38	67.84
Bra028697.1-P	Field mustard	mitochondrion	65.29	65.45
CDY14044	Canola	mitochondrion	63.84	65.26
CDY55181	Canola	mitochondrion	63.84	65.26
CDX81051	Canola	mitochondrion	62.86	64.27
CDX78292	Canola	mitochondrion	62.62	64.02
Bra005935.1-P	Field mustard	mitochondrion	63.84	63.99
CDY65233	Canola	mitochondrion	62.14	63.52
Bra009263.1-P	Field mustard	mitochondrion	63.35	63.5
PGSC0003DMT400070951	Potato	mitochondrion	63.35	63.5
CDX70039	Canola	mitochondrion	61.89	63.28
PGSC0003DMT400021509	Potato	mitochondrion	63.11	63.26
AT5G07440.1	Thale cress	mitochondrion	63.11	63.26
Solyc03g094010.2.1	Tomato	unclear	62.86	63.02
PGSC0003DMT400041325	Potato	mitochondrion	62.62	62.77
Solyc06g033860.1.1	Tomato	unclear	62.38	62.53
Solyc05g052100.2.1	Tomato	unclear	61.16	61.02
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	60.44	60.58
TraesCS2B01G409300.1	Wheat	mitochondrion	59.95	60.1
EES11206	Sorghum	mitochondrion	59.71	59.85
GSMUA_Achr2P10430_001	Banana	mitochondrion	59.71	59.85
Zm00001d025984_P001	Maize	mitochondrion	59.47	59.61
TraesCS2A01G389900.1	Wheat	mitochondrion	59.47	59.61
Os02t0650900-01	Rice	mitochondrion	57.28	57.42
TraesCS2D01G388800.1	Wheat	mitochondrion	59.95	55.38
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	58.5	50.1
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	31.8	49.43
VIT_00s1491g00010.t01	Wine grape	cytosol, mitochondrion	28.4	48.75
VIT_00s0204g00160.t01	Wine grape	cytosol	6.55	28.72
VIT_09s0002g02530.t01	Wine grape	cytosol	23.06	14.96

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	ProteinID:CCB50626	ProteinID:CCB50626.1	UniProt:F6HEI0
EMBL:FN595750	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS
InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208
PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF24
SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00021095FF	ArrayExpress:VIT_16s0039g02740	EnsemblPlantsGene:VIT_16s0039g02740
EnsemblPlants:VIT_16s0039g02740.t01	:	:	:	:	:

Description

Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HEI0]

Coordinates

chr16:-:3101215..3114572

Molecular Weight (calculated)

44379.3 Da

IEP (calculated)

6.551

GRAVY (calculated)

-0.011

Length

412 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRHASRILGL DSKLEKSLLI SFREIKVECA IPKDDGSLAT YVGFRVQHDN VDPDEVNALA QLMTWKTAVV DIPYGGAKGG IGCTPRDLSM
101: SELERLTRVF TQKIHDLIGT HTDIPAPDMG TNAQDLGGSL GREAATGQGV VFATEALLAQ HGKSIKGLTF VIQDFGNVGS WVARLIHERG GKIIAVSDVT
201: GAVKNQNGLD IVDLLRHKEE TGCLTNFSGG DHMDPNELLT HECDVLIPCA LGGVLSKENA ADVKAKFIIE AANHHPEANE ILSKKGVVIL PDIYANAGGV
301: TVNYFEWVHC QCEGSHSKTA VVRLTHCLNV MKSFGHILSK KGVVILPDIY ANAGGVTVNY FEWVHIQCEA SCLCHDAKGL GSLAGTTGRK VYDIPLTMGF
401: KSWTLSPLEI TS

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.