Factsheet for PGSC0003DMT400041325

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052100.2.1	Tomato	unclear	95.62	95.16
PGSC0003DMT400021509	Potato	mitochondrion	91.0	91.0
CDY14044	Canola	mitochondrion	86.62	88.34
CDY55181	Canola	mitochondrion	86.37	88.09
Bra028697.1-P	Field mustard	mitochondrion	88.08	88.08
AT5G07440.1	Thale cress	mitochondrion	87.59	87.59
PGSC0003DMT400070951	Potato	mitochondrion	87.59	87.59
Bra009263.1-P	Field mustard	mitochondrion	87.35	87.35
Bra005935.1-P	Field mustard	mitochondrion	87.1	87.1
CDX70039	Canola	mitochondrion	85.4	87.1
CDX78292	Canola	mitochondrion	85.4	87.1
CDX81051	Canola	mitochondrion	85.4	87.1
CDY65233	Canola	mitochondrion	85.4	87.1
CDX87065	Canola	cytosol, mitochondrion	47.2	85.46
VIT_16s0039g02750.t01	Wine grape	cytosol	85.4	85.4
VIT_16s0039g02720.t01	Wine grape	mitochondrion	84.91	84.91
KRH77294	Soybean	mitochondrion	84.43	84.43
KRH04228	Soybean	mitochondrion	83.94	83.74
KRH57522	Soybean	mitochondrion	83.7	83.5
GSMUA_Achr2P10430_001	Banana	mitochondrion	82.48	82.48
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	81.27	81.27
TraesCS2B01G409300.1	Wheat	mitochondrion	80.29	80.29
TraesCS2A01G389900.1	Wheat	mitochondrion	80.05	80.05
Os02t0650900-01	Rice	mitochondrion	79.81	79.81
EES11206	Sorghum	mitochondrion	79.56	79.56
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	79.08	79.08
Zm00001d025984_P001	Maize	mitochondrion	77.62	77.62
TraesCS2D01G388800.1	Wheat	mitochondrion	80.29	73.99
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	47.45	73.58
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	62.77	62.62
PGSC0003DMT400017579	Potato	cytosol	26.52	17.55

Protein Annotations

EntrezGene:102586580	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639
GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	UniProt:M1BB73
InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	EnsemblPlantsGene:PGSC0003DMG400016001	PGSC:PGSC0003DMG400016001
EnsemblPlants:PGSC0003DMT400041325	PIRSF:PIRSF000185	PRINTS:PR00082	PANTHER:PTHR11606	PANTHER:PTHR11606:SF24	SMART:SM00839
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00029504D9	RefSeq:XP_006365338.1	:	:

Description

Glutamate dehydrogenase A [Source:PGSC_GENE;Acc:PGSC0003DMG400016001]

Coordinates

chr5:-:47348117..47353993

Molecular Weight (calculated)

44651.6 Da

IEP (calculated)

6.648

GRAVY (calculated)

-0.163

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRQAARILGL DSKLERSLLI PFREIKVECT IPKDDGTLVS YVGFRVQHDN ARGPMKGGIR YHPEVDLDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCVPK ELSMSELERL TRVFTQKIHD LIGINTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPVDLGGSLG RESATGRGVV YAAEALLNEQ
201: GKHIKDLTFA IQGFGNVGSW VAKLIHEIGG KVVAVSDITG AVKNQNGLDI PALLSHKEAT GKLNDFGGGD VMSTDELLTH DCDVLIPCAL GGVLNRENAD
301: HVKAKFIVEA ANHPTDPDAD EILSKKGVLI LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNRELKKYM TKAFGNLKSM CQTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.