Factsheet for PGSC0003DMT400021552

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078550.1.1	Tomato	extracellular	98.78	98.78
CDY25453	Canola	cytosol, mitochondrion	91.48	91.48
Bra002139.1-P	Field mustard	mitochondrion	91.24	91.24
CDY38492	Canola	mitochondrion	91.0	91.0
HORVU4Hr1G061100.1	Barley	cytosol	16.3	90.54
AT5G18170.1	Thale cress	cytosol, mitochondrion	90.51	90.51
KRH06711	Soybean	cytosol, mitochondrion	88.32	88.32
KRG94812	Soybean	cytosol, mitochondrion	88.32	88.32
Os03t0794500-01	Rice	mitochondrion	88.08	88.08
OQU90838	Sorghum	cytosol, mitochondrion	87.59	87.59
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	87.1	87.1
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	87.1	87.1
CDY21157	Canola	cytosol, mitochondrion	87.1	87.1
Bra036428.1-P	Field mustard	cytosol, mitochondrion	87.1	87.1
Zm00001d034420_P002	Maize	plasma membrane	86.86	86.86
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	86.86	86.86
CDY29969	Canola	cytosol, mitochondrion	86.86	86.86
KRH08494	Soybean	mitochondrion	86.86	86.86
AT3G03910.1	Thale cress	cytosol, mitochondrion	86.86	86.86
KRH70158	Soybean	extracellular, mitochondrion	86.62	86.62
KRG88968	Soybean	cytosol	40.88	79.62
PGSC0003DMT400070951	Potato	mitochondrion	79.32	79.32
PGSC0003DMT400021509	Potato	mitochondrion	79.32	79.32
PGSC0003DMT400041325	Potato	mitochondrion	79.08	79.08
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	38.93	78.82
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	87.1	78.51
TraesCS5B01G437100.2	Wheat	extracellular	86.86	78.12
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	91.24	77.96
CDY64896	Canola	mitochondrion	86.37	77.68
TraesCS7D01G412300.1	Wheat	cytosol	28.22	68.64
TraesCS1B01G166200.2	Wheat	cytosol	20.92	64.18
TraesCS1D01G322800.1	Wheat	cytosol	10.95	60.0
Bra031964.1-P	Field mustard	mitochondrion	79.08	57.42
CDY50862	Canola	cytosol, mitochondrion, plastid	86.13	54.29
TraesCS5D01G021500.1	Wheat	cytosol	17.76	54.07
TraesCS1D01G080500.1	Wheat	cytosol	13.87	52.78
TraesCS1B01G472700.1	Wheat	cytosol	17.27	52.59
TraesCS6D01G031800.1	Wheat	cytosol	13.63	51.85
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.44	37.01
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	21.65	28.43
PGSC0003DMT400017579	Potato	cytosol	24.57	16.26

Protein Annotations

EntrezGene:102585678	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639
GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH
UniProt:M1AFA9	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	EnsemblPlantsGene:PGSC0003DMG400008356
PGSC:PGSC0003DMG400008356	EnsemblPlants:PGSC0003DMT400021552	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606
PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00029526DC	RefSeq:XP_006362255.1
RefSeq:XP_015158376.1	RefSeq:XP_015158377.1	RefSeq:XP_015158378.1	RefSeq:XP_015158379.1	RefSeq:XP_015158380.1	:

Description

NADH-glutamate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400008356]

Coordinates

chr10:+:59147780..59152084

Molecular Weight (calculated)

44666.5 Da

IEP (calculated)

6.651

GRAVY (calculated)

-0.198

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEQSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCSPS DLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTNPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGAL FATEALLNEH
201: GKSIAGQRFV IQGFGNVGSW AAKLIHEQGG KVVAVSDITG AIKNEKGIDI ESLFKHVKET RGVKGFHDAH PIDANSILVE DCDVLIPAAL GGVINKDNAN
301: EIKAKYIIEA ANHPTDPDAD EILSKKGVTI LPDIYANSGG VTVSYFEWVQ NIQGFMWDEK KVNDELKTYM TRGFKDVKEM CKTHNCDLRM GAFTLGVNRV
401: ARATVLRGWE A

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.