CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06711	Soybean	cytosol, mitochondrion	98.54	98.54
KRH08494	Soybean	mitochondrion	93.19	93.19
KRH70158	Soybean	extracellular, mitochondrion	92.46	92.46
KRG88968	Soybean	cytosol	46.47	90.52
AT5G18170.1	Thale cress	cytosol, mitochondrion	90.27	90.27
CDY25453	Canola	cytosol, mitochondrion	89.78	89.78
Bra002139.1-P	Field mustard	mitochondrion	89.29	89.29
CDY21157	Canola	cytosol, mitochondrion	89.05	89.05
CDY38492	Canola	mitochondrion	89.05	89.05
Bra036428.1-P	Field mustard	cytosol, mitochondrion	89.05	89.05
CDY29969	Canola	cytosol, mitochondrion	88.81	88.81
AT3G03910.1	Thale cress	cytosol, mitochondrion	88.56	88.56
Solyc10g078550.1.1	Tomato	extracellular	88.32	88.32
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	88.32	88.32
Os03t0794500-01	Rice	mitochondrion	86.86	86.86
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	86.13	86.13
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	85.64	85.64
OQU90838	Sorghum	cytosol, mitochondrion	85.4	85.4
HORVU4Hr1G061100.1	Barley	cytosol	15.33	85.14
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	84.67	84.67
Zm00001d034420_P002	Maize	plasma membrane	84.43	84.43
KRH04228	Soybean	mitochondrion	80.54	80.34
KRH57522	Soybean	mitochondrion	79.56	79.37
KRH77294	Soybean	mitochondrion	78.83	78.83
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	91.24	77.96
CDY64896	Canola	mitochondrion	86.62	77.9
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	37.96	76.85
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	84.67	76.32
TraesCS5B01G437100.2	Wheat	extracellular	84.43	75.93
TraesCS7D01G412300.1	Wheat	cytosol	28.71	69.82
TraesCS1B01G166200.2	Wheat	cytosol	21.41	65.67
TraesCS1D01G322800.1	Wheat	cytosol	10.71	58.67
Bra031964.1-P	Field mustard	mitochondrion	78.83	57.24
TraesCS5D01G021500.1	Wheat	cytosol	18.49	56.3
TraesCS1D01G080500.1	Wheat	cytosol	14.6	55.56
CDY50862	Canola	cytosol, mitochondrion, plastid	86.13	54.29
TraesCS6D01G031800.1	Wheat	cytosol	14.11	53.7
TraesCS1B01G472700.1	Wheat	cytosol	17.27	52.59
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.68	37.8
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	21.41	28.11
KRH09218	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.03	26.83
KRH38711	Soybean	endoplasmic reticulum	10.71	23.28
KRH44203	Soybean	nucleus	27.25	17.58
KRH47165	Soybean	nucleus	26.76	17.27

Protein Annotations

EntrezGene:100789509	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EMBL:ACUP02012038	EMBL:BT095808
UniProt:C6TDZ0	EnsemblPlantsGene:GLYMA_19G111000	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH
InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	EnsemblPlants:KRG94812	ProteinID:KRG94812
ProteinID:KRG94812.1	ProteinID:KRG94813.1	ProteinID:KRG94814.1	InterPro:NAD(P)-bd_dom_sf	InterPro:NAD_bind_Glu_DH	PFAM:PF00208
PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18
SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0001B1695C	:	:

Description

hypothetical protein

Coordinates

chr19:-:36534067..36538684

Molecular Weight (calculated)

44528.3 Da

IEP (calculated)

6.358

GRAVY (calculated)

-0.218

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLQS YVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCDPA ELSISELERL TRVFTQKIHD LIGTHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVL FATEALLNEY
201: GKSVSGQRFV IQGFGNVGSW AAQLISEKGG KVVAVSDITG AIKNSNGLDI PNLLEHSKGH RGVKGFHGGD PIDPNSILVE DCDVLVPAAL GGVINRENAN
301: EIKAKFIVEA ANHPTDPEAD EILKKKGVVI LPDIFANSGG VTVSYFEWVQ NIQGFMWDEE KVNNELKTYM TKGFKDVKEM CKTHECDPRM GAFTLAVNRV
401: ARATVLRGWE A

Best Arabidopsis Sequence Match ( AT3G03910.1 )
(BLAST)

001: MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS ELSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG RDAATGRGVL FATEALLNEH
201: GKTISGQRFA IQGFGNVGSW AAKLISDKGG KIVAVSDVTG AIKNNNGIDI LSLLEHAEEN RGIKGFDGAD SIDPDSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEG ANHPTDPEAD EILKKKGVMI LPDIYANSGG VTVSYFEWVQ NIQGFMWDEE KVNRELKTYM TRGFKDLKEM CQTHSCDLRM GAFTLGINRV
401: AQATTIRGWG S

Arabidopsis Description

GSH3Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178VBI2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.