Factsheet for Zm00001d034420_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90838	Sorghum	cytosol, mitochondrion	97.08	97.08
Os03t0794500-01	Rice	mitochondrion	95.62	95.62
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	94.65	94.65
HORVU4Hr1G061100.1	Barley	cytosol	16.55	91.89
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	90.27	90.27
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	90.27	90.27
Solyc10g078550.1.1	Tomato	extracellular	87.1	87.1
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	86.86	86.86
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	94.65	85.31
TraesCS5B01G437100.2	Wheat	extracellular	94.4	84.9
KRG94812	Soybean	cytosol, mitochondrion	84.43	84.43
KRH06711	Soybean	cytosol, mitochondrion	84.18	84.18
KRH08494	Soybean	mitochondrion	83.45	83.45
KRH70158	Soybean	extracellular, mitochondrion	82.24	82.24
Zm00001d025984_P001	Maize	mitochondrion	79.81	79.81
TraesCS7D01G412300.1	Wheat	cytosol	31.87	77.51
TraesCS1D01G322800.1	Wheat	cytosol	13.63	74.67
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	87.1	74.43
KRG88968	Soybean	cytosol	38.2	74.41
TraesCS1B01G166200.2	Wheat	cytosol	23.6	72.39
TraesCS1D01G080500.1	Wheat	cytosol	16.55	62.96
TraesCS6D01G031800.1	Wheat	cytosol	16.06	61.11
TraesCS5D01G021500.1	Wheat	cytosol	19.71	60.0
TraesCS1B01G472700.1	Wheat	cytosol	18.98	57.78
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.41	40.16
Zm00001d016419_P001	Maize	mitochondrion, plastid	18.73	35.48
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	25.06	32.91
Zm00001d044503_P004	Maize	cytosol	25.06	14.05

Protein Annotations

EntrezGene:100856888	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EntrezGene:542220	UniProt:B4F9J5
EMBL:BT033783	EMBL:BT035038	EMBL:BT039326	EMBL:BT040327	EMBL:BT061963	EMBL:BT064210
EMBL:BT067687	EMBL:EU962035	GO:GO:0003674	GO:GO:0003824	GO:GO:0004353	GO:GO:0006520
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114
InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	InterPro:NAD(P)-bd_dom_sf
InterPro:NAD_bind_Glu_DH	ProteinID:ONM10205.1	ProteinID:ONM10212.1	ProteinID:ONM10213.1	PFAM:PF00208	PFAM:PF02812
PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074	PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	SMART:SM00839
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI000160BCDD	EnsemblPlantsGene:Zm00001d034420	EnsemblPlants:Zm00001d034420_P002	EnsemblPlants:Zm00001d034420_T002

Description

glutamic dehydrogenase1Glutamate dehydrogenase

Coordinates

chr1:-:292477034..292483300

Molecular Weight (calculated)

44071.8 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.096

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATSRN FKQAAKLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS YVGFRVQHDN ARGPMKGGIR YHHEVDPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCSPG DLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTNSQTM AWILDEYSKF HGYSPAVVTG KPVDLGGSLG RDAATGRGVL FATEALLAEH
201: GKGIAGQRFV IQGFGNVGSW AAQLISEAGG KVIAISDVTG AVKNVDGLDI VQLVKHSAEN KGIKGFKGGD AIAPDSLLTE ECDVLIPAAL GGVINKDNAN
301: DIKAKYIIEA ANHPTDPEAD EILSKKGVLI LPDILANSGG VTVSYFEWVQ NIQGFMWDEE KVNAELRTYM TRAFGDVKQM CRSHSCDLRM GAFTLGVNRV
401: ARATVLRGWE A

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.