Factsheet for Zm00001d016419_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025984_P001	Maize	mitochondrion	42.86	22.63
Bra002139.1-P	Field mustard	mitochondrion	37.33	19.71
CDY38492	Canola	mitochondrion	37.33	19.71
AT5G18170.1	Thale cress	cytosol, mitochondrion	36.87	19.46
CDY25453	Canola	cytosol, mitochondrion	36.41	19.22
Bra036428.1-P	Field mustard	cytosol, mitochondrion	35.48	18.73
CDY21157	Canola	cytosol, mitochondrion	35.48	18.73
CDY29969	Canola	cytosol, mitochondrion	35.48	18.73
Zm00001d034420_P002	Maize	plasma membrane	35.48	18.73
AT3G03910.1	Thale cress	cytosol, mitochondrion	35.02	18.49
CDY64896	Canola	mitochondrion	35.02	16.63
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	11.52	12.32
CDY50862	Canola	cytosol, mitochondrion, plastid	35.48	11.81
Bra031964.1-P	Field mustard	mitochondrion	25.35	9.72
Zm00001d044503_P004	Maize	cytosol	19.35	5.73

Protein Annotations

EnsemblPlants:Zm00001d016419_P001	EnsemblPlants:Zm00001d016419_T001	EnsemblPlantsGene:Zm00001d016419	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR11606	PANTHER:PTHR11606:SF24	PFAM:PF00208	ProteinID:AQK70735.1
SEG:seg	SUPFAM:SSF51735	UniParc:UPI00084396C6	UniProt:A0A1D6H7J6	MapMan:25.1.6.1	:

Description

Glutamate dehydrogenase 2

Coordinates

chr5:-:161776485..161778329

Molecular Weight (calculated)

23526.8 Da

IEP (calculated)

11.422

GRAVY (calculated)

-0.318

Length

217 amino acids

Sequence
(BLAST)

001: MAQASLKLRR RPRPGSASRL LQPSGRPSSA QGKRSGRKRM GSASSLGARP RRGRLRGVMT NVTSVPRPER VRAMSSIRPA WPATIIGTST KCGAGSVPGT
101: AAALPADMAL ADETTGPGEY LTERRSCSRF GTFVTILAKK GVVVLPDIYA NSGGVVVSYF EWVQNIQGFM WAEEKVNDEL EKYMSSAFQH MKAMCKSLVL
201: PKCAMTLELR GLKKQAH

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.