CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38492	Canola	mitochondrion	98.54	98.54
AT5G18170.1	Thale cress	cytosol, mitochondrion	95.13	95.13
PGSC0003DMT400021552	Potato	cytosol, mitochondrion	91.48	91.48
CDY21157	Canola	cytosol, mitochondrion	91.48	91.48
CDY29969	Canola	cytosol, mitochondrion	91.24	91.24
Solyc10g078550.1.1	Tomato	extracellular	90.51	90.51
KRH06711	Soybean	cytosol, mitochondrion	90.02	90.02
KRG94812	Soybean	cytosol, mitochondrion	89.78	89.78
KRH70158	Soybean	extracellular, mitochondrion	88.08	88.08
KRH08494	Soybean	mitochondrion	87.59	87.59
GSMUA_Achr5P02870_001	Banana	cytosol, mitochondrion	85.64	85.64
GSMUA_Achr2P12720_001	Banana	cytosol, mitochondrion	85.4	85.4
HORVU4Hr1G061100.1	Barley	cytosol	15.33	85.14
Os03t0794500-01	Rice	mitochondrion	84.91	84.91
OQU90838	Sorghum	cytosol, mitochondrion	83.7	83.7
TraesCS5A01G434100.1	Wheat	cytosol, mitochondrion	83.45	83.45
CDX87065	Canola	cytosol, mitochondrion	45.74	82.82
KRG88968	Soybean	cytosol	41.36	80.57
CDY64896	Canola	mitochondrion	89.54	80.53
CDX70039	Canola	mitochondrion	78.35	79.9
CDY55181	Canola	mitochondrion	78.35	79.9
CDY65233	Canola	mitochondrion	78.35	79.9
CDY14044	Canola	mitochondrion	78.35	79.9
CDY64900	Canola	cytoskeleton, cytosol, mitochondrion	39.17	79.31
CDX78292	Canola	mitochondrion	77.37	78.91
CDX81051	Canola	mitochondrion	77.37	78.91
VIT_08s0007g07400.t01	Wine grape	cytoskeleton, golgi, peroxisome	91.0	77.75
TraesCS5D01G442000.1	Wheat	mitochondrion, plastid	83.45	75.22
TraesCS5B01G437100.2	Wheat	extracellular	83.21	74.84
TraesCS7D01G412300.1	Wheat	cytosol	26.76	65.09
TraesCS1B01G166200.2	Wheat	cytosol	20.44	62.69
CDY50862	Canola	cytosol, mitochondrion, plastid	89.29	56.29
TraesCS1D01G322800.1	Wheat	cytosol	9.98	54.67
TraesCS5D01G021500.1	Wheat	cytosol	17.76	54.07
TraesCS1D01G080500.1	Wheat	cytosol	13.38	50.93
TraesCS6D01G031800.1	Wheat	cytosol	13.14	50.0
TraesCS1B01G472700.1	Wheat	cytosol	16.3	49.63
Zm00001d016419_P001	Maize	mitochondrion, plastid	19.22	36.41
TraesCS7B01G165800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.95	35.43
TraesCS7B01G339000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	20.44	26.84
CDY52956	Canola	cytosol	25.79	18.76
CDY46542	Canola	cytosol	25.55	18.58
CDY33875	Canola	cytosol	25.55	16.91
CDY22863	Canola	cytosol	25.79	16.72
CDY18551	Canola	cytosol	9.25	11.34

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:A0A078GLF9	UniProt:A0A078GLF9	EnsemblPlants:CDY25453
ProteinID:CDY25453	ProteinID:CDY25453.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00032666001
InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_AS	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	InterPro:NAD(P)-bd_dom_sf
InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	ScanProsite:PS00074
PANTHER:PTHR11606	PANTHER:PTHR11606:SF18	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0004EE89C9

Description

BnaC09g39680DGlutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078GLF9]

Coordinates

chrLK032175:-:363902..366280

Molecular Weight (calculated)

44640.6 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.183

Length

411 amino acids

Sequence
(BLAST)

001: MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVANIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FATEALLNEH
201: GKSISGQRFV IQGFGNVGSW AAKLISEQGG KIVAVSDITG AIKNKDGIDI ESLLNYTKEH RGVKGFDGAH PIDANSILVE DCDILIPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNEELKTYM NRGFKNMKEM CKTHSCDLRM GAFTLGVNRV
401: ARATVLRGWG A

Best Arabidopsis Sequence Match ( AT5G18170.1 )
(BLAST)

001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A

Arabidopsis Description

GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.