CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
mitochondrion 3
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47165	Soybean	nucleus	98.43	98.43
VIT_09s0002g02530.t01	Wine grape	cytosol	88.38	88.66
KRH38711	Soybean	endoplasmic reticulum	25.9	87.3
PGSC0003DMT400017579	Potato	cytosol	82.57	84.7
Solyc01g068210.2.1	Tomato	nucleus	83.67	84.07
CDY46542	Canola	cytosol	72.84	82.12
CDY52956	Canola	cytosol	72.53	81.77
KRH09218	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.7	81.3
CDY33875	Canola	cytosol	78.65	80.68
AT1G51720.1	Thale cress	cytosol	80.06	80.06
Bra018927.1-P	Field mustard	cytosol	79.59	79.97
CDY22863	Canola	cytosol	79.59	79.97
Bra014299.1-P	Field mustard	cytosol	79.12	77.9
CDY18551	Canola	cytosol	40.19	76.42
GSMUA_AchrUn_...	Banana	cytosol	51.96	73.88
GSMUA_Achr8P05390_001	Banana	cytosol	69.7	73.03
TraesCS3A01G202500.1	Wheat	cytosol	67.19	65.85
TraesCS3D01G206100.4	Wheat	cytosol	67.03	65.79
TraesCS3B01G227100.1	Wheat	cytosol	66.25	65.43
EES00914	Sorghum	cytosol	66.72	65.38
Os01t0558200-01	Rice	mitochondrion	68.29	63.32
Zm00001d044503_P004	Maize	cytosol	66.41	57.71
HORVU3Hr1G048870.1	Barley	plastid	67.35	55.93
KRH70158	Soybean	extracellular, mitochondrion	17.9	27.74
KRH06711	Soybean	cytosol, mitochondrion	17.9	27.74
KRG94812	Soybean	cytosol, mitochondrion	17.58	27.25
KRH08494	Soybean	mitochondrion	17.11	26.52
KRH04228	Soybean	mitochondrion	17.11	26.46
KRH77294	Soybean	mitochondrion	16.95	26.28
KRH57522	Soybean	mitochondrion	16.95	26.21
KRG88968	Soybean	cytosol	8.48	25.59

Protein Annotations

Gene3D:1.10.285.10	EntrezGene:100788009	MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	EMBL:ACUP02004911
EnsemblPlantsGene:GLYMA_08G196200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004354	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006520	GO:GO:0006537	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:Glu/Leu/Phe/Val_DH
InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	UniProt:I1KUX4	EnsemblPlants:KRH44203	ProteinID:KRH44203	ProteinID:KRH44203.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00208	PFAM:PF02812	PRINTS:PR00082	PANTHER:PTHR43571	SMART:SM00839
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI0002338B26	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:15813187..15821919

Molecular Weight (calculated)

71313.4 Da

IEP (calculated)

6.974

GRAVY (calculated)

-0.419

Length

637 amino acids

Sequence
(BLAST)

001: MLLPTSGVGM NSAMDDMNLI QQTQRHHLVV REIGEEIDLE IGAGEDDPSF GNATLIGAPM RESSVEEHGE SKQTGMISQL PNDAQDMSKT QQGKRRKKVV
101: KRWREEWADT YKWAYVDMKD GTPRIFCSVC REYGRKHRRN PYGNEGSRNM QMSALEEHNN SLLHKEALRL QMASKDKIVV DKPVYVKVAM SKTAGSILEA
201: TLKRDPHEVE FIQAVQEAVQ ALERVIAKNS RYINIMERLL EPERMIVFRV SWVDDRGETC VNRGFRVQFN QSMGPCRGGI RFHPSMNLSV AKFLGFEQTL
301: KNALSPYKLG GAAGGSDFDP KGKSDNEIMR FCQSFMSEMY RYLGPDKDLP SEEMGVGTRE MGYLFGQYRR LAGHFQGSFT GPRIFWSGSS LRPEATGYGL
401: VFFAQLMLAD MNKELKGLRC VVSGSGKIAM HVLEKLIAYG ALPISVSDSR GYLVDEDGFD YMKISFLRDI KAQQRSLRDY SKTYARSKYY DEAKPWSERC
501: DVAFACASQN EIDQSDAINL VNSGCRILVE GSNMPCTPEA VQILRKASVL IAPAMAAGAG GVVAGELELN HECSLMHWSP EDFESKLQEA MKQTYQRAMK
601: AATDFGYQKE SPEALVHGAV ISAFLTIAQA MTDQGSI

Best Arabidopsis Sequence Match ( AT1G51720.1 )
(BLAST)

001: MFGPTGGLGM NPSMDDMNLI QQAQRHQLVV SNLGEEIDLE IGPGEDDAAF ANNSLIGGPP REPSTGEHDE TKHMVLVSDL PSEDQDISKG TPAKRKKKVV
101: KRWREEWADT YKWAYVDMKD GTARIFCSIC REYGRKHRRN PYGNEGSRNM QMSALEEHNN SLLHKEALRL QTASKDKIVV DKPIYVKTVM SKSAGSIVEG
201: ALKRDPNEIE FVQSVQESVH ALERVIAKNS HYVNIMERLL EPERMIVFRV PWIDDRGETH VNRGFRVQFN QALGPCRGGI RFHPSMNLSI AKFLGFQQTL
301: KNALSPYKLG GASGGSDFDP KGKSDNEIMR FCQSFMNEMY RYMGPDKDLP SEEVGVGTRE MGYLFGQYRR LAGQFQGSFT GPRIYWAASS LRTEASGYGV
401: VYFARLILAD MNKEIKGLRC VVSGCGKIAM HVVEKLIACG AHPVTVSDSK GYLVDDDGFD YMKLAFLRDI KSQQRSLRDY SKTYARAKYF DELKPWNERC
501: DVAFPCASQN EVDQADAINL VNAGCRLLVE GSNMPCTAEA VDVFRKANVL IAPAIAAGAG GVAAGEIEVL RESNSMQWSA EDFESRLQEA LKQTYEKALK
601: AANDFGYQKE SPEALLHGAT IAAFLNIAQA MTDQGCV

Arabidopsis Description

Amino acid dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:F4I9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.