Factsheet for Solyc05g052100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

mitochondrion 8
cytosol 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041325	Potato	mitochondrion	95.16	95.62
Solyc03g094010.2.1	Tomato	unclear	89.83	90.27
CDY14044	Canola	mitochondrion	84.5	86.6
Bra028697.1-P	Field mustard	mitochondrion	85.96	86.37
CDY55181	Canola	mitochondrion	84.26	86.35
AT5G07440.1	Thale cress	mitochondrion	85.47	85.89
Solyc06g033860.1.1	Tomato	unclear	84.99	85.4
Bra009263.1-P	Field mustard	mitochondrion	84.75	85.16
Bra005935.1-P	Field mustard	mitochondrion	84.75	85.16
CDX78292	Canola	mitochondrion	83.05	85.11
CDX81051	Canola	mitochondrion	83.05	85.11
CDX70039	Canola	mitochondrion	82.81	84.86
CDY65233	Canola	mitochondrion	82.81	84.86
CDX87065	Canola	cytosol, mitochondrion	46.25	84.14
VIT_16s0039g02750.t01	Wine grape	cytosol	83.29	83.7
KRH77294	Soybean	mitochondrion	83.29	83.7
VIT_16s0039g02720.t01	Wine grape	mitochondrion	82.81	83.21
KRH04228	Soybean	mitochondrion	82.81	83.01
KRH57522	Soybean	mitochondrion	82.08	82.28
GSMUA_Achr2P10430_001	Banana	mitochondrion	81.11	81.51
Os04t0543900-02	Rice	extracellular, mitochondrion, plasma membrane, plastid	80.39	80.78
Os02t0650900-01	Rice	mitochondrion	79.18	79.56
TraesCS2B01G409300.1	Wheat	mitochondrion	78.93	79.32
TraesCS2A01G389900.1	Wheat	mitochondrion	78.69	79.08
EES11206	Sorghum	mitochondrion	78.45	78.83
Solyc10g078550.1.1	Tomato	extracellular	77.24	77.62
Zm00001d025984_P001	Maize	mitochondrion	76.51	76.89
HORVU2Hr1G093030.1	Barley	cytosol, mitochondrion	47.46	73.96
TraesCS2D01G388800.1	Wheat	mitochondrion	78.93	73.09
VIT_16s0039g02740.t01	Wine grape	cytosol, mitochondrion	61.02	61.16
Solyc01g068210.2.1	Tomato	nucleus	26.39	17.19

Protein Annotations

MapMan:25.1.6.1	Gene3D:3.40.50.10860	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0006520
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016639	GO:GO:0055114
InterPro:Glu/Leu/Phe/Val_DH	InterPro:Glu/Leu/Phe/Val_DH_C	InterPro:Glu/Leu/Phe/Val_DH_dimer_dom	InterPro:Glu_DH	UniProt:K4C1P1	InterPro:NAD(P)-bd_dom_sf
InterPro:NAD_bind_Glu_DH	PFAM:PF00208	PFAM:PF02812	PIRSF:PIRSF000185	PRINTS:PR00082	PANTHER:PTHR11606
PANTHER:PTHR11606:SF24	SMART:SM00839	SUPFAM:SSF51735	SUPFAM:SSF53223	EnsemblPlantsGene:Solyc05g052100.2	EnsemblPlants:Solyc05g052100.2.1
UniParc:UPI0002765B0B	SEG:seg	:	:	:	:

Description

Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4C1P1]

Coordinates

chr5:-:62419793..62425203

Molecular Weight (calculated)

44929.9 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.176

Length

413 amino acids

Sequence
(BLAST)

001: MNALAATNRN FRQAARILGL DSKLEKSLLI PFREIKKRWN AQFPKDDGTL VSYVGIRVQH DNARGPMKGG IRYHPEVDLD EVNALAQLMT WKTAVADIPY
101: GGAKGGIGCI PKELSLSELE RLTRVFTQKI HDLIGINTDV PAPDMGTNAQ TMAWILDEYS KFHGHSPAVV TGKPVDLGGS LGREAATGRG VVYAAEALLN
201: EQGKQIKDLT FAIQGFGNVG SWVAKLIHEI GGKVVAVSDI TGAIKNQNGL DIPALLSHKE ATGNLIDFGG GDVMNTDELL THDCDVLIPC ALGGVLNREN
301: ADHVNAKFIV EAANHPTDPD ADEILSKKGV LILPDIYANA GGVTVSYFEW VQNIQGFMWD EEKVNRELKK YMTKAFGNLK SMCQSHSCNL RMGAFTLGVN
401: RVARATQLRG WEA

Best Arabidopsis Sequence Match ( AT5G07440.1 )
(BLAST)

001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A

Arabidopsis Description

GDH2Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEW8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.