Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0794500-01 | Rice | mitochondrion | 54.46 | 14.84 |
| AT5G07440.1 | Thale cress | mitochondrion | 49.11 | 13.38 |
| Os04t0543900-02 | Rice | extracellular, mitochondrion, plasma membrane, plastid | 47.32 | 12.9 |
| Os02t0650900-01 | Rice | mitochondrion | 46.43 | 12.65 |
| Os01t0558200-01 | Rice | mitochondrion | 20.54 | 3.35 |
Protein Annotations
| EnsemblPlants:Os01t0358900-00 | EnsemblPlantsGene:Os01g0358900 | PANTHER:PTHR11606 | PANTHER:PTHR11606:SF18 | ProteinID:BAS72087.1 | SEG:seg |
| UniParc:UPI000009FD7F | UniProt:A0A0P0V2K0 | MapMan:25.1.6.1 | : | : | : |
Description
Similar to GDHB glutamate dehydrogenase. (Os01t0358900-00)
Coordinates
chr1:-:14545123..14545507
Molecular Weight (calculated)
11921.0 Da
IEP (calculated)
7.607
GRAVY (calculated)
-0.587
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MESALAAAEA EAEAEAYAGG EAEAAVHARS PSPELQHGHL PCPPIGDGVG LSGGGGGRHA PRRRRQGQTY MTRGFRDEKE MCRSHHCDLR MGAFTLGVNR
101: VARATVLRGW EA
101: VARATVLRGW EA
001: MNALAATNRN FKLAARLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVAKIPYGG
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A
101: AKGGIGCDPS KLSISELERL TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGYSPAVVTG KPIDLGGSLG RDAATGRGVM FGTEALLNEH
201: GKTISGQRFV IQGFGNVGSW AAKLISEKGG KIVAVSDITG AIKNKDGIDI PALLKHTKEH RGVKGFDGAD PIDPNSILVE DCDILVPAAL GGVINRENAN
301: EIKAKFIIEA ANHPTDPDAD EILSKKGVVI LPDIYANSGG VTVSYFEWVQ NIQGFMWEEE KVNDELKTYM TRSFKDLKEM CKTHSCDLRM GAFTLGVNRV
401: AQATILRGWG A
Arabidopsis Description
GDH1Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178UEK9]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.