Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os08t0511700-00 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G48630.1 | Os08t0511700-00 | AT4G35470.1 | 21798944 |
AT3G18130.1 | Os08t0511700-00 | AT4G35470.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3D01G264000.1 | Wheat | cytosol | 90.42 | 90.96 |
TraesCS3B01G297300.1 | Wheat | nucleus | 90.42 | 90.96 |
HORVU3Hr1G063670.2 | Barley | cytosol | 90.42 | 90.96 |
TraesCS3A01G263900.1 | Wheat | nucleus | 90.12 | 90.66 |
EES01286 | Sorghum | cytosol | 85.63 | 86.14 |
GSMUA_Achr1P05500_001 | Banana | cytosol | 66.17 | 81.25 |
GSMUA_Achr1P11860_001 | Banana | cytosol | 65.57 | 80.22 |
Os05t0552300-02 | Rice | cytosol | 80.54 | 80.06 |
GSMUA_Achr5P10020_001 | Banana | cytosol | 72.16 | 79.8 |
PGSC0003DMT400074094 | Potato | cytosol | 73.65 | 75.46 |
Solyc03g119040.2.1 | Tomato | nucleus | 73.65 | 75.46 |
Solyc06g069010.2.1 | Tomato | nucleus | 73.65 | 75.46 |
KRH60497 | Soybean | endoplasmic reticulum, nucleus | 73.05 | 75.08 |
PGSC0003DMT400014419 | Potato | cytosol | 73.35 | 74.92 |
VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 73.05 | 74.62 |
KRH41792 | Soybean | nucleus | 72.46 | 74.46 |
Bra025931.1-P | Field mustard | cytosol | 72.46 | 73.78 |
Bra031014.1-P | Field mustard | cytosol | 71.56 | 73.09 |
AT1G18080.1 | Thale cress | cytosol | 71.56 | 73.09 |
AT1G48630.1 | Thale cress | cytosol | 71.26 | 73.01 |
AT3G18130.1 | Thale cress | cytosol | 71.26 | 73.01 |
Solyc12g040510.1.1 | Tomato | cytosol | 71.86 | 72.95 |
PGSC0003DMT400040923 | Potato | cytosol | 71.86 | 72.95 |
PGSC0003DMT400041253 | Potato | cytosol | 18.56 | 72.94 |
CDX92200 | Canola | extracellular | 70.96 | 72.92 |
CDX95784 | Canola | cytosol | 70.96 | 72.92 |
CDY18497 | Canola | cytosol | 70.96 | 72.7 |
CDX95554 | Canola | cytosol | 70.96 | 72.7 |
Bra022282.1-P | Field mustard | cytosol | 70.66 | 72.62 |
CDY64888 | Canola | cytosol | 64.97 | 72.58 |
Bra018745.1-P | Field mustard | cytosol | 64.67 | 72.48 |
Bra016570.1-P | Field mustard | cytosol | 70.96 | 72.48 |
Bra032261.1-P | Field mustard | cytosol | 70.36 | 71.87 |
CDX93686 | Canola | cytosol | 64.07 | 71.81 |
CDX86074 | Canola | cytosol | 64.07 | 71.81 |
CDY44104 | Canola | cytosol | 64.07 | 71.81 |
CDY26186 | Canola | cytosol | 53.59 | 71.6 |
CDY60778 | Canola | cytosol, plastid | 53.29 | 71.2 |
CDX81860 | Canola | cytosol | 53.29 | 71.2 |
Bra021294.1-P | Field mustard | cytosol | 69.46 | 71.17 |
CDX83869 | Canola | cytosol | 52.99 | 70.8 |
CDY71917 | Canola | cytosol | 51.5 | 70.49 |
CDY21720 | Canola | cytosol | 52.69 | 70.4 |
CDX96736 | Canola | cytosol | 52.4 | 70.0 |
CDY59680 | Canola | cytosol | 47.01 | 69.78 |
CDY52180 | Canola | cytosol | 31.74 | 65.43 |
KRH48610 | Soybean | cytosol | 55.09 | 54.12 |
Bra000607.1-P | Field mustard | cytosol | 48.5 | 40.91 |
CDX77303 | Canola | cytosol | 24.85 | 26.86 |
CDX77299 | Canola | plastid | 6.59 | 22.68 |
CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 39.52 | 14.68 |
Os03t0625900-01 | Rice | nucleus | 16.77 | 10.96 |
Protein Annotations
MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | EntrezGene:4324115 | EMBL:AK060428 | EMBL:AK098893 | EMBL:AK121587 |
EMBL:AP003452 | ProteinID:BAF05824.1 | ProteinID:BAS73760.1 | EMBL:D38231 | ProteinID:EAZ13132.1 | InterPro:G-protein_beta_WD-40_rep |
GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006950 | GO:GO:0006952 |
GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 |
GO:GO:0009987 | GO:GO:0016020 | GO:GO:0050832 | GO:GO:0060267 | InterPro:IPR001680 | InterPro:IPR015943 |
InterPro:IPR017986 | EnsemblPlantsGene:Os01g0686800 | EnsemblPlants:Os01t0686800-02 | UniProt:P49027 | PFAM:PF00400 | PRINTS:PR00320 |
ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 | SMART:SM00320 |
SUPFAM:SSF50978 | UniParc:UPI0000001741 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
InterPro:WD40_repeat_dom_sf | RefSeq:XP_015620921.1 | SEG:seg | : | : | : |
Description
RECEPTOR FOR ACTIVATED C-KINASE 1Protein containing the WD-40 repeat, Innate immunuty (Os01t0686800-01);Similar to Guanine nucleotide-binding protein subunit beta-like protein A. (Os01t0686800-02)
Coordinates
chr1:+:28330800..28333317
Molecular Weight (calculated)
36233.6 Da
IEP (calculated)
6.412
GRAVY (calculated)
-0.124
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAQESLVL AGVMHGHNDV VTAIATPIDN SPFIVSSSRD KSLLVWDLTN PVQNVGEGAG ASEYGVPFRR LTGHSHFVQD VVLSSDGQFA LSGSWDGELR
101: LWDLSTGVTT RRFVGHDKDV LSVAFSVDNR QIVSASRDRT IKLWNTLGEC KYTIGGDLGG GEGHNGWVSC VRFSPNTFQP TIVSGSWDRT VKVWNLTNCK
201: LRCNLEGHGG YVNAVAVSPD GSLCASGGKD GVTLLWDLAE GKRLYSLDAG SIIHSLCFSP NRYWLCAATQ DSIKIWDLES KHIVQDLKPE IPVSKNQMLY
301: CTSLNWSADG STLYAGYTDG TIRIYKISGF SYAG
101: LWDLSTGVTT RRFVGHDKDV LSVAFSVDNR QIVSASRDRT IKLWNTLGEC KYTIGGDLGG GEGHNGWVSC VRFSPNTFQP TIVSGSWDRT VKVWNLTNCK
201: LRCNLEGHGG YVNAVAVSPD GSLCASGGKD GVTLLWDLAE GKRLYSLDAG SIIHSLCFSP NRYWLCAATQ DSIKIWDLES KHIVQDLKPE IPVSKNQMLY
301: CTSLNWSADG STLYAGYTDG TIRIYKISGF SYAG
001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
Arabidopsis Description
RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.