Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g082350.2.1 | |
| Solyc06g083730.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48630.1 | Solyc02g082350.2.1 | AT4G35470.1 | 21798944 |
| AT1G48630.1 | Solyc06g083730.2.1 | AT5G43960.1 | 21798944 |
| AT3G18130.1 | Solyc02g082350.2.1 | AT4G35470.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040923 | Potato | cytosol | 99.7 | 99.7 |
| Solyc03g119040.2.1 | Tomato | nucleus | 91.79 | 92.64 |
| Solyc06g069010.2.1 | Tomato | nucleus | 90.58 | 91.41 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 85.41 | 85.93 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 83.59 | 84.62 |
| KRH41792 | Soybean | nucleus | 83.28 | 84.31 |
| Bra031014.1-P | Field mustard | cytosol | 79.33 | 79.82 |
| CDY26186 | Canola | cytosol | 60.49 | 79.6 |
| Bra025931.1-P | Field mustard | cytosol | 79.33 | 79.57 |
| Bra016570.1-P | Field mustard | cytosol | 79.03 | 79.51 |
| CDX92200 | Canola | extracellular | 78.42 | 79.38 |
| CDX95784 | Canola | cytosol | 78.42 | 79.38 |
| AT1G18080.1 | Thale cress | cytosol | 78.72 | 79.2 |
| CDY60778 | Canola | cytosol, plastid | 60.18 | 79.2 |
| CDX83869 | Canola | cytosol | 60.18 | 79.2 |
| CDY21720 | Canola | cytosol | 60.18 | 79.2 |
| AT1G48630.1 | Thale cress | cytosol | 78.42 | 79.14 |
| CDY18497 | Canola | cytosol | 78.42 | 79.14 |
| CDY71917 | Canola | cytosol | 58.66 | 79.1 |
| Bra022282.1-P | Field mustard | cytosol | 78.12 | 79.08 |
| CDX95554 | Canola | cytosol | 78.12 | 78.83 |
| CDX96736 | Canola | cytosol | 59.88 | 78.8 |
| CDX81860 | Canola | cytosol | 59.88 | 78.8 |
| AT3G18130.1 | Thale cress | cytosol | 77.81 | 78.53 |
| Bra032261.1-P | Field mustard | cytosol | 77.2 | 77.68 |
| Bra021294.1-P | Field mustard | cytosol | 76.9 | 77.61 |
| CDY59680 | Canola | cytosol | 52.58 | 76.89 |
| CDY64888 | Canola | cytosol | 69.3 | 76.25 |
| Bra018745.1-P | Field mustard | cytosol | 69.0 | 76.17 |
| CDX93686 | Canola | cytosol | 68.09 | 75.17 |
| CDY44104 | Canola | cytosol | 68.09 | 75.17 |
| CDX86074 | Canola | cytosol | 68.09 | 75.17 |
| Zm00001d038923_P001 | Maize | plastid | 73.56 | 72.46 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 73.25 | 72.16 |
| TraesCS3D01G264000.1 | Wheat | cytosol | 72.64 | 71.99 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 72.64 | 71.99 |
| Os01t0686800-02 | Rice | cytosol | 72.95 | 71.86 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 72.34 | 71.69 |
| TraesCS3A01G263900.1 | Wheat | nucleus | 72.34 | 71.69 |
| EES18632 | Sorghum | cytosol | 72.34 | 71.26 |
| TraesCS1B01G398800.1 | Wheat | plastid | 71.73 | 70.45 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 71.43 | 70.15 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 70.82 | 69.55 |
| EES01286 | Sorghum | cytosol | 69.91 | 69.28 |
| Os05t0552300-02 | Rice | cytosol | 69.91 | 68.45 |
| CDY52180 | Canola | cytosol | 33.13 | 67.28 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 66.26 | 62.11 |
| GSMUA_Achr2P14580_001 | Banana | cytosol | 52.28 | 55.13 |
| Bra000607.1-P | Field mustard | cytosol | 53.5 | 44.44 |
| CDX77303 | Canola | cytosol | 27.66 | 29.45 |
| CDX77299 | Canola | plastid | 6.69 | 22.68 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 40.73 | 14.91 |
| Solyc02g069770.2.1 | Tomato | nucleus | 18.84 | 12.02 |
Protein Annotations
| MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4DEU5 | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 | SMART:SM00320 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc12g040510.1 | EnsemblPlants:Solyc12g040510.1.1 | UniParc:UPI000276A68E | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
No Description!
Coordinates
chr12:-:43836145..43837740
Molecular Weight (calculated)
36136.7 Da
IEP (calculated)
7.794
GRAVY (calculated)
-0.184
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQESLVLRG TMKAHTDWVT AIATPIDNSD MIVTSSRDKS IIVWSLTKEG SQYGVPRRRL TGHGHFVQDV VLSSDGMFAL SGSWDGELRL WDLQAGTTAR
101: RFVGHTKDVL SVAFSVDNRQ IVSASRDKSI KLWNTLGECK YTIQDQDSHS DWVSCVRFSP NNLQPTIVSG SWDRTVKIWN LSNCKLRATL AGHTGYVNTA
201: AVSPDGSLCA SGGKDGVILL WDLAEGKKLY SLDSGSIIHA LCFSPNRYWL CAATESSIKI WDLESKSIVV DLRVDLKQET EMSGNATSTS GNSKTKVIYC
301: TSLSWSADGS TLFSGYTDGL IRVWGIGRY
101: RFVGHTKDVL SVAFSVDNRQ IVSASRDKSI KLWNTLGECK YTIQDQDSHS DWVSCVRFSP NNLQPTIVSG SWDRTVKIWN LSNCKLRATL AGHTGYVNTA
201: AVSPDGSLCA SGGKDGVILL WDLAEGKKLY SLDSGSIIHA LCFSPNRYWL CAATESSIKI WDLESKSIVV DLRVDLKQET EMSGNATSTS GNSKTKVIYC
301: TSLSWSADGS TLFSGYTDGL IRVWGIGRY
001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY
Arabidopsis Description
RACK1BRACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.