Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26186 | Canola | cytosol | 75.91 | 99.6 |
| CDY60778 | Canola | cytosol, plastid | 75.3 | 98.8 |
| Bra031014.1-P | Field mustard | cytosol | 98.48 | 98.78 |
| Bra016570.1-P | Field mustard | cytosol | 96.65 | 96.94 |
| AT1G18080.1 | Thale cress | cytosol | 96.34 | 96.64 |
| Bra022282.1-P | Field mustard | cytosol | 87.2 | 88.0 |
| Bra032261.1-P | Field mustard | cytosol | 86.89 | 87.16 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 86.28 | 87.08 |
| Bra021294.1-P | Field mustard | cytosol | 86.28 | 86.81 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 85.98 | 86.24 |
| KRH41792 | Soybean | nucleus | 85.37 | 86.15 |
| Bra018745.1-P | Field mustard | cytosol | 78.05 | 85.91 |
| Solyc03g119040.2.1 | Tomato | nucleus | 81.71 | 82.21 |
| PGSC0003DMT400074094 | Potato | cytosol | 81.4 | 81.9 |
| PGSC0003DMT400014419 | Potato | cytosol | 81.1 | 81.35 |
| Solyc06g069010.2.1 | Tomato | nucleus | 80.79 | 81.29 |
| Solyc12g040510.1.1 | Tomato | cytosol | 79.57 | 79.33 |
| PGSC0003DMT400040923 | Potato | cytosol | 79.27 | 79.03 |
| PGSC0003DMT400041253 | Potato | cytosol | 20.12 | 77.65 |
| Zm00001d038923_P001 | Maize | plastid | 74.09 | 72.75 |
| Os01t0686800-02 | Rice | cytosol | 73.78 | 72.46 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 73.78 | 72.46 |
| TraesCS1B01G398800.1 | Wheat | plastid | 73.78 | 72.24 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 73.48 | 71.94 |
| EES18632 | Sorghum | cytosol | 72.87 | 71.56 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 72.56 | 71.04 |
| EES01286 | Sorghum | cytosol | 71.65 | 70.78 |
| Os05t0552300-02 | Rice | cytosol | 71.65 | 69.94 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 70.73 | 69.88 |
| TraesCS3D01G264000.1 | Wheat | cytosol | 70.73 | 69.88 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 70.73 | 69.88 |
| TraesCS3A01G263900.1 | Wheat | nucleus | 70.43 | 69.58 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 68.9 | 64.39 |
| GSMUA_Achr2P14580_001 | Banana | cytosol | 55.79 | 58.65 |
| Bra000607.1-P | Field mustard | cytosol | 59.15 | 48.99 |
| Bra014236.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus, plastid | 7.62 | 12.82 |
| Bra029576.1-P | Field mustard | nucleus | 16.16 | 10.91 |
| Bra000814.1-P | Field mustard | nucleus | 16.16 | 10.82 |
Protein Annotations
| MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | EnsemblPlantsGene:Bra025931 | EnsemblPlants:Bra025931.1 | EnsemblPlants:Bra025931.1-P | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:M4EAX2 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000253F3D4 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
AT1G18080 (E=7e-185) ATARCA, RACK1A_AT | ATARCA; nucleotide binding
Coordinates
chrA06:+:6945725..6947050
Molecular Weight (calculated)
35759.3 Da
IEP (calculated)
7.793
GRAVY (calculated)
-0.159
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGLVLKGT MRAHTDMVTA IATPIDNSDP IVSASRDKSI IVWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TIAEGGGEGH RDWVSCVRFS PNTLQPTIVS ASWDKTVKVW NLSNCKLRST LAGHTGYVNT
201: VAVSPDGSLC ASGGKDGVVL LWDLAEGKKL YSLEANSVIH ALCFSPNRYW LCAATEQGIK IWDLESKSVV EDLKVDLKAE AEKSDGSGTA ATKRKVIYCT
301: SLNWSADGST LFSGYTDGVI RVWGIGRY
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TIAEGGGEGH RDWVSCVRFS PNTLQPTIVS ASWDKTVKVW NLSNCKLRST LAGHTGYVNT
201: VAVSPDGSLC ASGGKDGVVL LWDLAEGKKL YSLEANSVIH ALCFSPNRYW LCAATEQGIK IWDLESKSVV EDLKVDLKAE AEKSDGSGTA ATKRKVIYCT
301: SLNWSADGST LFSGYTDGVI RVWGIGRY
001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
Arabidopsis Description
RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.