Factsheet for Bra021294.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18497	Canola	cytosol	98.47	98.47
CDX95554	Canola	cytosol	98.16	98.16
Bra022282.1-P	Field mustard	cytosol	96.32	96.62
Bra032261.1-P	Field mustard	cytosol	87.42	87.16
Bra016570.1-P	Field mustard	cytosol	87.12	86.85
Bra025931.1-P	Field mustard	cytosol	86.81	86.28
Bra018745.1-P	Field mustard	cytosol	78.83	86.24
Bra031014.1-P	Field mustard	cytosol	86.5	86.24
KRH60497	Soybean	endoplasmic reticulum, nucleus	83.13	83.38
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	83.13	82.87
KRH41792	Soybean	nucleus	82.52	82.77
Solyc03g119040.2.1	Tomato	nucleus	80.06	80.06
PGSC0003DMT400074094	Potato	cytosol	80.06	80.06
Solyc06g069010.2.1	Tomato	nucleus	79.45	79.45
PGSC0003DMT400014419	Potato	cytosol	79.14	78.9
Solyc12g040510.1.1	Tomato	cytosol	77.61	76.9
PGSC0003DMT400040923	Potato	cytosol	77.61	76.9
PGSC0003DMT400041253	Potato	cytosol	19.94	76.47
Zm00001d038923_P001	Maize	plastid	71.17	69.46
Os01t0686800-02	Rice	cytosol	71.17	69.46
Zm00001d009480_P001	Maize	plasma membrane, plastid	70.86	69.16
EES18632	Sorghum	cytosol	70.25	68.56
TraesCS1B01G398800.1	Wheat	plastid	69.94	68.06
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	69.63	67.76
HORVU3Hr1G063670.2	Barley	cytosol	68.4	67.17
TraesCS3D01G264000.1	Wheat	cytosol	68.4	67.17
TraesCS3B01G297300.1	Wheat	nucleus	68.4	67.17
TraesCS1D01G385000.1	Wheat	cytosol	69.02	67.16
Os05t0552300-02	Rice	cytosol	69.02	66.96
TraesCS3A01G263900.1	Wheat	nucleus	68.1	66.87
EES01286	Sorghum	cytosol	68.1	66.87
HORVU1Hr1G083710.1	Barley	cytosol	65.95	61.25
GSMUA_Achr2P14580_001	Banana	cytosol	54.29	56.73
Bra000607.1-P	Field mustard	cytosol	62.27	51.26
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	7.98	13.33
Bra029576.1-P	Field mustard	nucleus	15.34	10.29
Bra000814.1-P	Field mustard	nucleus	15.03	10.0

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra021294	EnsemblPlants:Bra021294.1	EnsemblPlants:Bra021294.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4DXP8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254521F	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

AT3G18130 (E=7e-177) RACK1C_AT | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding

Coordinates

chrA01:+:22729183..22730320

Molecular Weight (calculated)

35583.3 Da

IEP (calculated)

8.203

GRAVY (calculated)

-0.123

Length

326 amino acids

Sequence
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNSDI IVTSSRDKSI ILWKLTKDEK SYGVAQRRLT GHSHFVEDVV LSPAGQFALS GSWDGELRLW DLATGVSTRR
101: FVGHTKYVLS VAFSVANRQI ASASRDRTIK LWNTLGECKY TISEADGHKD WISCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLKSSLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEGGSIIHSL CFSPNRYWLC AATESSIKIW DLESKSVVDE LKVDLKAEAE KCDGGVGTGN QKKVNYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY

Best Arabidopsis Sequence Match ( AT3G18130.1 )
(BLAST)

001: MAEGLVLKGI MRAHTDIVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGETTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY

Arabidopsis Description

RACK1CReceptor for activated C kinase 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LV28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.