Factsheet for Bra000607.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011617.1-P
Bra017712.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18130.1	Bra011617.1-P	AT4G35470.1	21798944
AT3G18130.1	Bra017712.1-P	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021294.1-P	Field mustard	cytosol	51.26	62.27
Bra022282.1-P	Field mustard	cytosol	51.01	62.15
AT3G18130.1	Thale cress	cytosol	51.01	61.96
Bra032261.1-P	Field mustard	cytosol	49.75	60.24
Bra031014.1-P	Field mustard	cytosol	49.24	59.63
Bra025931.1-P	Field mustard	cytosol	48.99	59.15
Bra016570.1-P	Field mustard	cytosol	48.74	59.02
PGSC0003DMT400041253	Potato	cytosol	12.37	57.65
Bra018745.1-P	Field mustard	cytosol	43.18	57.38
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	46.72	56.57
KRH60497	Soybean	endoplasmic reticulum, nucleus	46.21	56.31
KRH41792	Soybean	nucleus	46.21	56.31
Solyc06g069010.2.1	Tomato	nucleus	44.7	54.29
Solyc03g119040.2.1	Tomato	nucleus	44.44	53.99
PGSC0003DMT400074094	Potato	cytosol	44.44	53.99
PGSC0003DMT400014419	Potato	cytosol	44.44	53.82
PGSC0003DMT400040923	Potato	cytosol	44.44	53.5
Solyc12g040510.1.1	Tomato	cytosol	44.44	53.5
Zm00001d038923_P001	Maize	plastid	40.91	48.5
Os01t0686800-02	Rice	cytosol	40.91	48.5
EES18632	Sorghum	cytosol	40.91	48.5
Os05t0552300-02	Rice	cytosol	40.91	48.21
Zm00001d009480_P001	Maize	plasma membrane, plastid	40.66	48.2
HORVU3Hr1G063670.2	Barley	cytosol	40.4	48.19
TraesCS3B01G297300.1	Wheat	nucleus	40.4	48.19
TraesCS3D01G264000.1	Wheat	cytosol	40.4	48.19
TraesCS3A01G263900.1	Wheat	nucleus	40.15	47.89
TraesCS1B01G398800.1	Wheat	plastid	40.15	47.46
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	39.9	47.16
EES01286	Sorghum	cytosol	39.14	46.69
TraesCS1D01G385000.1	Wheat	cytosol	39.39	46.57
GSMUA_Achr2P14580_001	Banana	cytosol	35.35	44.87
HORVU1Hr1G083710.1	Barley	cytosol	38.64	43.59
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	6.82	13.85
Bra000814.1-P	Field mustard	nucleus	13.38	10.82
Bra029576.1-P	Field mustard	nucleus	12.37	10.08

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra000607	EnsemblPlants:Bra000607.1	EnsemblPlants:Bra000607.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005078	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009791
GO:GO:0009845	GO:GO:0009967	GO:GO:0009987	GO:GO:0019538	GO:GO:0043410	GO:GO:0048364
GO:GO:0048367	GO:GO:0071215	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4C8S9
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19868
PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002540198	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT3G18130 (E=7e-110) RACK1C_AT | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding

Coordinates

chrA03:-:12024169..12025359

Molecular Weight (calculated)

43659.9 Da

IEP (calculated)

5.462

GRAVY (calculated)

-0.151

Length

396 amino acids

Sequence
(BLAST)

001: MAEILVPKGI LRGHTDMVTA IGVSSDKCDI IVTASRDKSI ILWDINKGGK SYGVAQRRLT GHAHFVEDVI LSWNGGHALS GSCDGELRIW KLDTGASVRF
101: VGHTDEVLSV DMSDDQRTIL SASRDCTIKL WTVDGVCNCT ISEQDGGHKD CISCFRFIPN RDYGLSIVSA SWDGTVKVWD VDNFFNCKLN YSLVGHSACR
201: ATLAVSPNGQ LCASGGVDGA ILLWTLADGN KVCSLEDNSI IHSLCFCPNR NWLCAATENG IKIWDFVRRI IVEELQVDLK AEAEKCDGGV RTVKWSVDGS
301: TLFIAYTDGA VRVWGIKEQR KTESLSQALP SATIDTGKGD DYNIGALPLK EQTEQIQQQE KPQRFDLDNL FSLSSLVEIY IEKSLQRMSV QKRKEL

Best Arabidopsis Sequence Match ( AT1G18080.1 )
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY

Arabidopsis Description

RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.