Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18497 | Canola | cytosol | 93.25 | 93.25 |
| AT1G48630.1 | Thale cress | cytosol | 92.94 | 92.94 |
| CDX95554 | Canola | cytosol | 92.94 | 92.94 |
| CDX92200 | Canola | extracellular | 92.64 | 92.92 |
| CDX95784 | Canola | cytosol | 92.33 | 92.62 |
| AT1G18080.1 | Thale cress | cytosol | 87.42 | 87.16 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 86.2 | 86.46 |
| KRH41792 | Soybean | nucleus | 85.58 | 85.85 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 84.36 | 84.1 |
| Solyc03g119040.2.1 | Tomato | nucleus | 81.29 | 81.29 |
| PGSC0003DMT400074094 | Potato | cytosol | 80.98 | 80.98 |
| Solyc06g069010.2.1 | Tomato | nucleus | 80.37 | 80.37 |
| PGSC0003DMT400014419 | Potato | cytosol | 80.37 | 80.12 |
| Solyc12g040510.1.1 | Tomato | cytosol | 78.53 | 77.81 |
| PGSC0003DMT400040923 | Potato | cytosol | 78.53 | 77.81 |
| PGSC0003DMT400041253 | Potato | cytosol | 20.25 | 77.65 |
| Zm00001d038923_P001 | Maize | plastid | 73.01 | 71.26 |
| Os01t0686800-02 | Rice | cytosol | 73.01 | 71.26 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 72.7 | 70.96 |
| EES18632 | Sorghum | cytosol | 72.39 | 70.66 |
| EES01286 | Sorghum | cytosol | 70.86 | 69.58 |
| TraesCS1B01G398800.1 | Wheat | plastid | 71.47 | 69.55 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 70.55 | 69.28 |
| TraesCS3D01G264000.1 | Wheat | cytosol | 70.55 | 69.28 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 70.55 | 69.28 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 71.17 | 69.25 |
| TraesCS3A01G263900.1 | Wheat | nucleus | 70.25 | 68.98 |
| Os05t0552300-02 | Rice | cytosol | 70.86 | 68.75 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 70.55 | 68.66 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 67.48 | 62.68 |
| GSMUA_Achr2P14580_001 | Banana | cytosol | 56.44 | 58.97 |
| Bra000607.1-P | Field mustard | cytosol | 61.96 | 51.01 |
| AT4G21130.1 | Thale cress | nucleus | 17.79 | 12.11 |
| AT4G05410.1 | Thale cress | nucleus | 16.26 | 10.52 |
Protein Annotations
| MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | EntrezGene:821338 | ProteinID:AEE76051.1 | ArrayExpress:AT3G18130 | EnsemblPlantsGene:AT3G18130 |
| RefSeq:AT3G18130 | TAIR:AT3G18130 | RefSeq:AT3G18130-TAIR-G | EnsemblPlants:AT3G18130.1 | TAIR:AT3G18130.1 | EMBL:AY050338 |
| EMBL:AY101529 | ProteinID:BAB02025.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005078 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006464 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009791 |
| GO:GO:0009845 | GO:GO:0009967 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | GO:GO:0043410 |
| GO:GO:0048364 | GO:GO:0048367 | GO:GO:0071215 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| RefSeq:NP_188441.1 | PFAM:PF00400 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 | UniProt:Q9LV28 | Symbol:RACK1C_AT | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI000009CF4B | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | : | : | : | : | : |
Description
RACK1CReceptor for activated C kinase 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LV28]
Coordinates
chr3:-:6210878..6212551
Molecular Weight (calculated)
35829.4 Da
IEP (calculated)
7.138
GRAVY (calculated)
-0.175
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGLVLKGI MRAHTDIVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGETTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.