Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031014.1-P | Field mustard | cytosol | 96.94 | 96.94 |
| Bra025931.1-P | Field mustard | cytosol | 96.64 | 96.34 |
| CDX81860 | Canola | cytosol | 73.39 | 96.0 |
| CDY26186 | Canola | cytosol | 73.39 | 96.0 |
| CDX83869 | Canola | cytosol | 73.09 | 95.6 |
| CDY21720 | Canola | cytosol | 73.09 | 95.6 |
| CDY60778 | Canola | cytosol, plastid | 72.78 | 95.2 |
| Bra016570.1-P | Field mustard | cytosol | 94.8 | 94.8 |
| CDX96736 | Canola | cytosol | 72.17 | 94.4 |
| AT1G48630.1 | Thale cress | cytosol | 87.46 | 87.73 |
| AT3G18130.1 | Thale cress | cytosol | 87.16 | 87.42 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 85.93 | 86.46 |
| KRH41792 | Soybean | nucleus | 85.02 | 85.54 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 85.32 | 85.32 |
| Solyc03g119040.2.1 | Tomato | nucleus | 81.65 | 81.9 |
| PGSC0003DMT400014419 | Potato | cytosol | 81.35 | 81.35 |
| Solyc06g069010.2.1 | Tomato | nucleus | 80.43 | 80.67 |
| PGSC0003DMT400074094 | Potato | cytosol | 80.43 | 80.67 |
| Solyc12g040510.1.1 | Tomato | cytosol | 79.2 | 78.72 |
| PGSC0003DMT400040923 | Potato | cytosol | 78.9 | 78.42 |
| CDY52180 | Canola | cytosol | 38.53 | 77.78 |
| PGSC0003DMT400041253 | Potato | cytosol | 19.57 | 75.29 |
| Os01t0686800-02 | Rice | cytosol | 73.09 | 71.56 |
| Zm00001d038923_P001 | Maize | plastid | 72.78 | 71.26 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 72.48 | 70.96 |
| TraesCS1B01G398800.1 | Wheat | plastid | 72.48 | 70.75 |
| EES18632 | Sorghum | cytosol | 72.17 | 70.66 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 72.17 | 70.45 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 70.64 | 69.58 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 70.64 | 69.58 |
| TraesCS3D01G264000.1 | Wheat | cytosol | 70.64 | 69.58 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 71.25 | 69.55 |
| TraesCS3A01G263900.1 | Wheat | nucleus | 70.34 | 69.28 |
| EES01286 | Sorghum | cytosol | 70.34 | 69.28 |
| Os05t0552300-02 | Rice | cytosol | 70.34 | 68.45 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 67.58 | 62.96 |
| GSMUA_Achr2P14580_001 | Banana | cytosol | 55.66 | 58.33 |
| AT4G21130.1 | Thale cress | nucleus | 17.13 | 11.69 |
| AT4G05410.1 | Thale cress | nucleus | 16.21 | 10.52 |
Protein Annotations
| MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | PDB:3DM0 | EntrezGene:838388 | UniProt:A0A178WHX3 | ProteinID:AAF78369.1 |
| ProteinID:AAF97825.1 | ProteinID:AEE29673.1 | EMBL:AK318781 | ArrayExpress:AT1G18080 | EnsemblPlantsGene:AT1G18080 | RefSeq:AT1G18080 |
| TAIR:AT1G18080 | RefSeq:AT1G18080-TAIR-G | EnsemblPlants:AT1G18080.1 | TAIR:AT1G18080.1 | Symbol:ATARCA | EMBL:AY035007 |
| EMBL:AY063016 | EMBL:AY088480 | Unigene:At.22612 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0004871 | GO:GO:0005078 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006417 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009749 | GO:GO:0009791 | GO:GO:0009845 | GO:GO:0009967 |
| GO:GO:0009987 | GO:GO:0010228 | GO:GO:0010476 | GO:GO:0019538 | GO:GO:0022626 | GO:GO:0030529 |
| GO:GO:0032947 | GO:GO:0042254 | GO:GO:0042788 | GO:GO:0043410 | GO:GO:0046686 | GO:GO:0071215 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_173248.1 | UniProt:O24456 | ProteinID:OAP17351.1 |
| PFAM:PF00400 | PO:PO:0000003 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 |
| SMART:SM00320 | SUPFAM:SSF50978 | EMBL:U77381 | UniParc:UPI000000144D | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
Coordinates
chr1:+:6222201..6224242
Molecular Weight (calculated)
35749.4 Da
IEP (calculated)
7.807
GRAVY (calculated)
-0.127
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.