Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G05410.1 | Thale cress | nucleus | 59.08 | 56.15 |
| KRH11768 | Soybean | cytosol, mitochondrion, nucleus | 28.39 | 52.92 |
| VIT_10s0003g04610.t01 | Wine grape | nucleus | 55.95 | 51.64 |
| KRH36772 | Soybean | nucleus | 52.82 | 51.01 |
| GSMUA_Achr8P02970_001 | Banana | nucleus | 51.77 | 49.01 |
| Solyc02g069770.2.1 | Tomato | nucleus | 51.36 | 47.67 |
| PGSC0003DMT400054611 | Potato | nucleus | 50.94 | 47.29 |
| GSMUA_Achr10P... | Banana | nucleus | 50.94 | 46.74 |
| HORVU5Hr1G010440.3 | Barley | cytosol, nucleus | 45.51 | 46.68 |
| Zm00001d013697_P002 | Maize | plasma membrane | 47.18 | 44.14 |
| Zm00001d033244_P001 | Maize | cytosol, nucleus, plastid | 46.76 | 43.92 |
| EER91177 | Sorghum | cytosol, nucleus, plastid | 46.76 | 43.75 |
| TraesCS5D01G051600.1 | Wheat | nucleus | 46.97 | 43.44 |
| TraesCS5A01G043100.1 | Wheat | plastid | 46.76 | 43.08 |
| Os03t0625900-01 | Rice | nucleus | 45.93 | 43.05 |
| AT3G18130.1 | Thale cress | cytosol | 12.11 | 17.79 |
| AT1G48630.1 | Thale cress | cytosol | 12.11 | 17.79 |
| AT1G18080.1 | Thale cress | cytosol | 11.69 | 17.13 |
Protein Annotations
| MapMan:17.1.3.2.1.9 | Gene3D:2.130.10.10 | EntrezGene:827861 | ProteinID:AEE84406.1 | ArrayExpress:AT4G21130 | EnsemblPlantsGene:AT4G21130 |
| RefSeq:AT4G21130 | TAIR:AT4G21130 | RefSeq:AT4G21130-TAIR-G | EnsemblPlants:AT4G21130.1 | TAIR:AT4G21130.1 | EMBL:AY874865 |
| Unigene:At.54451 | ProteinID:CAA17532.1 | ProteinID:CAB79113.1 | ncoils:Coil | Symbol:EMB2271 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0030515 | GO:GO:0030529 | GO:GO:0032040 | GO:GO:0034511 |
| GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_193845.2 | PFAM:PF00400 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19865 | PANTHER:PTHR19865:SF0 | UniProt:Q3MKM6 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00005B5F07 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
EMB2271U3 snoRNP-associated protein-like EMB2271 [Source:UniProtKB/Swiss-Prot;Acc:Q3MKM6]
Coordinates
chr4:+:11274296..11276299
Molecular Weight (calculated)
53584.4 Da
IEP (calculated)
6.021
GRAVY (calculated)
-0.576
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLEKKKGIG AKRRGKKSSI DHDPFLEEET EKRRKFNYDD DDDIESVESE EEGKVGEEVE DEFAHETVGE KRKRLAEDTL NRIEEAKQRE HEEDNEEDDD
101: FRDSLVAKTL MQEQLEKSGR VRRANALRVQ DLQSSDKFRV IVKHQHSVTG VALSDDDSRG FSVSKDGTIL HWDVSSGKSD EYKWPSDEVL KSHGLKFQES
201: WYTRHNKQSL ALAVSSDGRY LATGGVDCHV HLWDIRTREH VQAFTGHCGI VSSLCFREGT AELFSGSYDG TLSIWNAEHR TYIESCFGHQ SELLSIDALG
301: RERVLSVGRD RTMQLYKVPE STRLIYRASE SNFECCCFVN SDEFLSGSDN GSIALWSILK KKPVFIVNNA HHVIADHDSV NHNCTPACSW VSSVAVCRGS
401: ELAASGAGNG CVRLWGVESG SSAIQPLYEL PLPGFVNSLA FAKSGRFLIA GVGQEPRLGR WGCLKSAQNG VAIHPLRLS
101: FRDSLVAKTL MQEQLEKSGR VRRANALRVQ DLQSSDKFRV IVKHQHSVTG VALSDDDSRG FSVSKDGTIL HWDVSSGKSD EYKWPSDEVL KSHGLKFQES
201: WYTRHNKQSL ALAVSSDGRY LATGGVDCHV HLWDIRTREH VQAFTGHCGI VSSLCFREGT AELFSGSYDG TLSIWNAEHR TYIESCFGHQ SELLSIDALG
301: RERVLSVGRD RTMQLYKVPE STRLIYRASE SNFECCCFVN SDEFLSGSDN GSIALWSILK KKPVFIVNNA HHVIADHDSV NHNCTPACSW VSSVAVCRGS
401: ELAASGAGNG CVRLWGVESG SSAIQPLYEL PLPGFVNSLA FAKSGRFLIA GVGQEPRLGR WGCLKSAQNG VAIHPLRLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.