CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	96.09	96.47
Zm00001d013697_P002	Maize	plasma membrane	94.14	94.14
Os03t0625900-01	Rice	nucleus	80.27	80.43
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	66.6	73.02
TraesCS5A01G043100.1	Wheat	plastid	71.88	70.77
TraesCS5D01G051600.1	Wheat	nucleus	71.29	70.46
GSMUA_Achr8P02970_001	Banana	nucleus	59.96	60.67
KRH11768	Soybean	cytosol, mitochondrion, nucleus	30.08	59.92
GSMUA_Achr10P...	Banana	nucleus	59.38	58.24
CDY39169	Canola	cytosol, nucleus, plastid	40.82	56.18
VIT_10s0003g04610.t01	Wine grape	nucleus	55.08	54.34
KRH36772	Soybean	nucleus	51.76	53.43
PGSC0003DMT400054611	Potato	nucleus	52.93	52.52
Solyc02g069770.2.1	Tomato	nucleus	52.73	52.33
CDY21330	Canola	nucleus	47.66	50.41
CDY62001	Canola	nucleus	47.66	50.31
Bra000814.1-P	Field mustard	nucleus	47.27	49.39
AT4G05410.1	Thale cress	nucleus	47.66	48.41
Bra029576.1-P	Field mustard	nucleus	45.31	47.74
AT4G21130.1	Thale cress	nucleus	43.75	46.76
CDY28878	Canola	nucleus	21.88	37.09
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	12.3	32.31
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	11.33	29.74
EES18632	Sorghum	cytosol	11.72	17.96
EES01286	Sorghum	cytosol	10.74	16.57

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	EntrezGene:8062216	UniProt:C5WR85	EnsemblPlants:EER91177	ProteinID:EER91177
ProteinID:EER91177.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030515	GO:GO:0032040	GO:GO:0034511	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320	EnsemblPlantsGene:SORBI_3001G157300	SUPFAM:SSF50978	UniParc:UPI0001A8211B
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002464179.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:12714173..12724468

Molecular Weight (calculated)

56412.1 Da

IEP (calculated)

6.222

GRAVY (calculated)

-0.702

Length

512 amino acids

Sequence
(BLAST)

001: MAPRPRKRAS RPKPRPGSRR GGGGGDDDPF FESEPKRRRG GRDEDIESED SDDDGGVAAV GGGFDEDGDG GGEEEDEETV GEKKMRMAKE WLQKVTEVAK
101: RGQEDDDEDE DESGGRRVAE ILQRKQLEES GRKRREIAAR VLPPGPQDGF KFLVKHRQPV TAVALSKDSD KGFSASKDGV IMHWDVETGK CEKYIWPSEN
201: VLVSHHAKPP VSAKRSKQVL ALAASSDGRY LASGGLDRHI HLWDVRSREH IQAFSGHRGP ISCLSFAPDS SELFSGSFDR SIMQWNAEDR TYMNCLYGHQ
301: NEILTMDALS KDRILTVARD RTMHLWKIPE ESQLVFRAPA AASLESCCFI DDKEFLSGSD DGSIELWSIM RKKPILIIKN AHAVSCTNLN SVDNDDESPK
401: ENGIHKPENV PSAAQSWVGT VAARRGSDLA ASGAGNGLVR LWAVKPDSKG VEPLFDLKLD GFVNSLAIAK SGRFIVAGVG QEPRLGRWGR VRSAQNGVAI
501: HPIRLKDEKE DL

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.