Factsheet for Zm00001d013697_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91177	Sorghum	cytosol, nucleus, plastid	94.14	94.14
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	93.75	94.12
Os03t0625900-01	Rice	nucleus	77.93	78.08
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	65.62	71.95
TraesCS5A01G043100.1	Wheat	plastid	70.51	69.42
TraesCS5D01G051600.1	Wheat	nucleus	70.12	69.31
KRH11768	Soybean	cytosol, mitochondrion, nucleus	29.88	59.53
GSMUA_Achr8P02970_001	Banana	nucleus	58.59	59.29
GSMUA_Achr10P...	Banana	nucleus	58.59	57.47
CDY39169	Canola	cytosol, nucleus, plastid	39.65	54.57
VIT_10s0003g04610.t01	Wine grape	nucleus	54.69	53.95
KRH36772	Soybean	nucleus	51.17	52.82
Solyc02g069770.2.1	Tomato	nucleus	52.93	52.52
PGSC0003DMT400054611	Potato	nucleus	52.73	52.33
CDY21330	Canola	nucleus	46.29	48.97
CDY62001	Canola	nucleus	45.9	48.45
Bra000814.1-P	Field mustard	nucleus	45.7	47.76
AT4G21130.1	Thale cress	nucleus	44.14	47.18
AT4G05410.1	Thale cress	nucleus	46.29	47.02
Bra029576.1-P	Field mustard	nucleus	44.53	46.91
CDY28878	Canola	nucleus	21.48	36.42
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	12.11	31.79
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	11.33	29.74
Zm00001d009480_P001	Maize	plasma membrane, plastid	11.33	17.37
Zm00001d038923_P001	Maize	plastid	11.33	17.37

Protein Annotations

EntrezGene:100276857	MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	ProteinID:AQK64177.1	UniProt:B6TJR4	EMBL:BT085785
EMBL:EU965229	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0034511	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000182DF17	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d013697	EnsemblPlants:Zm00001d013697_P002	EnsemblPlants:Zm00001d013697_T002	SEG:seg	:

Description

U3 snoRNP-associated protein-like EMB2271

Coordinates

chr5:+:17805127..17812508

Molecular Weight (calculated)

56630.4 Da

IEP (calculated)

6.344

GRAVY (calculated)

-0.687

Length

512 amino acids

Sequence
(BLAST)

001: MAPRSRKRAS RPKPRPGSRR GGGGGDDDPF FESAPKRRRG DRDEDIESED SDDDGVAALG RGFDEDGDEG GKEDEDEETV GEKKMRIAKE WLKKVTEVAK
101: RGQEDDDEDE NVSGGRRVAE ILQRKQLEES GRKRREIAAR VLPPGPQDGF KVLVKHRQPV TAVALSKDSD KGFSGSKDGI IMHWDVETGK CEKYIWPSED
201: VLVSHHAKPP VSAKRSKQVL ALAASSDGRY LASGGLDRHI HLWDIRSQEH IQAFSGHRGP ISCLAFAPDS SELFSGSFDR SIMQWNAEDR TYMNCLYGHQ
301: NEILTMDAFS KERILTVARD RTMHLWKIPE ESQLVFRAPV ATSLECCCFI DDKEFLSGSD DGSIELWSIM RKKPILIVKN AHPVSCTDLN SVDNDDESPK
401: ENGIHKPESV SSAAQSWVGT VAARRGSDLA ASGAGNGLVR LWAIKPDSKG VEPLFDLKLD GFVNSLAIAK SGRFIVAGVG QEPRLGRWGR VRSAQNGVAI
501: HPIRLKDEKE DL

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.