Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39169 | Canola | cytosol, nucleus, plastid | 54.64 | 44.35 |
| CDY21330 | Canola | nucleus | 56.29 | 35.12 |
| CDY62001 | Canola | nucleus | 55.3 | 34.43 |
| KRH11768 | Soybean | cytosol, mitochondrion, nucleus | 25.5 | 29.96 |
| CDY45049 | Canola | endoplasmic reticulum, mitochondrion, nucleus, plastid | 18.54 | 28.72 |
| AT4G05410.1 | Thale cress | nucleus | 47.68 | 28.57 |
| VIT_10s0003g04610.t01 | Wine grape | nucleus | 39.07 | 22.74 |
| HORVU5Hr1G010440.3 | Barley | cytosol, nucleus | 34.44 | 22.27 |
| GSMUA_Achr8P02970_001 | Banana | nucleus | 37.09 | 22.13 |
| Zm00001d033244_P001 | Maize | cytosol, nucleus, plastid | 37.09 | 21.96 |
| EER91177 | Sorghum | cytosol, nucleus, plastid | 37.09 | 21.88 |
| KRH36772 | Soybean | nucleus | 35.76 | 21.77 |
| Zm00001d013697_P002 | Maize | plasma membrane | 36.42 | 21.48 |
| GSMUA_Achr10P... | Banana | nucleus | 37.09 | 21.46 |
| PGSC0003DMT400054611 | Potato | nucleus | 36.42 | 21.32 |
| Solyc02g069770.2.1 | Tomato | nucleus | 36.09 | 21.12 |
| Os03t0625900-01 | Rice | nucleus | 35.43 | 20.94 |
| TraesCS5D01G051600.1 | Wheat | nucleus | 34.77 | 20.27 |
| TraesCS5A01G043100.1 | Wheat | plastid | 34.77 | 20.19 |
| CDY71917 | Canola | cytosol | 11.59 | 14.34 |
| CDX96736 | Canola | cytosol | 11.59 | 14.0 |
| CDX83869 | Canola | cytosol | 11.59 | 14.0 |
| CDX81860 | Canola | cytosol | 11.59 | 14.0 |
| CDY59680 | Canola | cytosol | 10.26 | 13.78 |
| CDY26186 | Canola | cytosol | 11.26 | 13.6 |
| CDY21720 | Canola | cytosol | 11.26 | 13.6 |
| CDY64888 | Canola | cytosol | 13.24 | 13.38 |
| CDX95784 | Canola | cytosol | 14.24 | 13.23 |
| CDX92200 | Canola | extracellular | 14.24 | 13.23 |
| CDY60778 | Canola | cytosol, plastid | 10.93 | 13.2 |
| CDX95554 | Canola | cytosol | 14.24 | 13.19 |
| CDY18497 | Canola | cytosol | 14.24 | 13.19 |
| CDY52180 | Canola | cytosol | 6.95 | 12.96 |
| CDY44104 | Canola | cytosol | 12.58 | 12.75 |
| CDX93686 | Canola | cytosol | 12.58 | 12.75 |
| CDX86074 | Canola | cytosol | 12.58 | 12.75 |
| CDX77299 | Canola | plastid | 3.31 | 10.31 |
| CDX77303 | Canola | cytosol | 5.3 | 5.18 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 11.26 | 3.78 |
Protein Annotations
| MapMan:17.1.3.2.1.9 | Gene3D:2.130.10.10 | UniProt:A0A078GW64 | EnsemblPlants:CDY28878 | ProteinID:CDY28878 | ProteinID:CDY28878.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0034511 | EnsemblPlantsGene:GSBRNA2T00041560001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19865 | PANTHER:PTHR19865:SF0 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EDB689 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
BnaC06g26660DBnaC06g26660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW64]
Coordinates
chrLK032227:+:309321..311598
Molecular Weight (calculated)
33735.4 Da
IEP (calculated)
10.327
GRAVY (calculated)
-0.438
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPLISPTTT PKASQLRKRV LSSTGTSPLG KKEIYKWPSD DTLKSHGMKV REPRIKKHSR ATLALAASSD GRYLATGGVD HHVHIWDVLT REHVQAFPGH
101: RNTAWNVEDK AFVQDSFGHQ YYVLAIDAQR KERANSVGRD RTMQLHKSCC FISDTEYRSG SDNMTVALWG MLKKKPIFLL KNEHSVAADG ITINENGDHD
201: KVEYNNSCTA SSWVSSVAVC RGSDLSASGA GNGFVHLMAV KASALRPLFK LPLVRLPDLH LKRLRVLLTK APIRISHFTL DQTRKQREHS SIIQEANSQI
301: YV
101: RNTAWNVEDK AFVQDSFGHQ YYVLAIDAQR KERANSVGRD RTMQLHKSCC FISDTEYRSG SDNMTVALWG MLKKKPIFLL KNEHSVAADG ITINENGDHD
201: KVEYNNSCTA SSWVSSVAVC RGSDLSASGA GNGFVHLMAV KASALRPLFK LPLVRLPDLH LKRLRVLLTK APIRISHFTL DQTRKQREHS SIIQEANSQI
301: YV
001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA
Arabidopsis Description
YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.