CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11768	Soybean	cytosol, mitochondrion, nucleus	49.4	95.33
VIT_10s0003g04610.t01	Wine grape	nucleus	66.33	63.39
Solyc02g069770.2.1	Tomato	nucleus	61.29	58.91
PGSC0003DMT400054611	Potato	nucleus	60.89	58.53
CDY39169	Canola	cytosol, nucleus, plastid	43.35	57.8
GSMUA_Achr8P02970_001	Banana	nucleus	57.66	56.52
GSMUA_Achr10P...	Banana	nucleus	58.47	55.56
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	51.21	54.39
AT4G21130.1	Thale cress	nucleus	51.01	52.82
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	53.23	51.76
EER91177	Sorghum	cytosol, nucleus, plastid	53.43	51.76
Os03t0625900-01	Rice	nucleus	53.02	51.47
TraesCS5A01G043100.1	Wheat	plastid	53.83	51.35
CDY21330	Canola	nucleus	50.0	51.24
Zm00001d013697_P002	Maize	plasma membrane	52.82	51.17
TraesCS5D01G051600.1	Wheat	nucleus	53.43	51.16
CDY62001	Canola	nucleus	50.0	51.13
Bra000814.1-P	Field mustard	nucleus	50.2	50.82
Bra029576.1-P	Field mustard	nucleus	48.99	50.0
AT4G05410.1	Thale cress	nucleus	49.6	48.81
CDY28878	Canola	nucleus	21.77	35.76
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	12.3	31.28
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	12.1	30.77
KRH60497	Soybean	endoplasmic reticulum, nucleus	12.5	19.08
KRH48610	Soybean	cytosol	12.9	18.82
KRH41792	Soybean	nucleus	12.3	18.77

Protein Annotations

EntrezGene:100816732	MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	EMBL:ACUP02005394	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_09G023100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030515	GO:GO:0032040	GO:GO:0034511	UniProt:I1L0E0	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	ProteinID:KRH36771.1	EnsemblPlants:KRH36772	ProteinID:KRH36772	ProteinID:KRH36772.1	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233D640	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:1843306..1848405

Molecular Weight (calculated)

55367.4 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.749

Length

496 amino acids

Sequence
(BLAST)

001: MPRKKKAHDP FFTNDSRKRQ KQNKKLDEDE EEDAEIESDF DEDGFFAGGG GGGEEQEEEE TGAEVRKRLA QDLLQRVRKS AQKGEEEEDD EEEEDEEGAR
101: DSLVAQKLLK EQNEESGRVR RSLASRVKVS GDEGFRVLAK HRHSVTAVAL SEDDSKGFSA SKDGTIMQWD VNSGQCERYK WPSDSVLKSH GLKDPQGSAT
201: RQSKQVLALA ASSDGRYLAT GGLDRHIHIW DTRTREHLQS FPGHRGPVSC LTFRQGTSEL FSGSFDRTIK IWNVEDRTYM STLFGHQSEV LSIDCLRKER
301: VLTAGRDRSM QLFKVHEESR LVFRAPASSL ECCCFVGNDE LFSGSDDGSI ELWTVMRKKP IYILRNAHAL PVDSMKSDQK DSEKLPNGNL ENGYNHPKDH
401: HCLSVFSWVS AVSVCRNSDL AASGAGNGSV RLWEIESDTK DIKSLCNVPL AGFVNSLAFA KSGEFLVAGV GQEPRLGRWG RNPEARNGVS ILPLKL

Best Arabidopsis Sequence Match ( AT4G21130.1 )
(BLAST)

001: MKLEKKKGIG AKRRGKKSSI DHDPFLEEET EKRRKFNYDD DDDIESVESE EEGKVGEEVE DEFAHETVGE KRKRLAEDTL NRIEEAKQRE HEEDNEEDDD
101: FRDSLVAKTL MQEQLEKSGR VRRANALRVQ DLQSSDKFRV IVKHQHSVTG VALSDDDSRG FSVSKDGTIL HWDVSSGKSD EYKWPSDEVL KSHGLKFQES
201: WYTRHNKQSL ALAVSSDGRY LATGGVDCHV HLWDIRTREH VQAFTGHCGI VSSLCFREGT AELFSGSYDG TLSIWNAEHR TYIESCFGHQ SELLSIDALG
301: RERVLSVGRD RTMQLYKVPE STRLIYRASE SNFECCCFVN SDEFLSGSDN GSIALWSILK KKPVFIVNNA HHVIADHDSV NHNCTPACSW VSSVAVCRGS
401: ELAASGAGNG CVRLWGVESG SSAIQPLYEL PLPGFVNSLA FAKSGRFLIA GVGQEPRLGR WGCLKSAQNG VAIHPLRLS

Arabidopsis Description

EMB2271U3 snoRNP-associated protein-like EMB2271 [Source:UniProtKB/Swiss-Prot;Acc:Q3MKM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.