Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029576.1-P | Field mustard | nucleus | 91.94 | 70.37 |
| CDY21330 | Canola | nucleus | 84.41 | 64.88 |
| CDY62001 | Canola | nucleus | 83.87 | 64.33 |
| AT4G05410.1 | Thale cress | nucleus | 76.88 | 56.75 |
| CDY28878 | Canola | nucleus | 44.35 | 54.64 |
| KRH11768 | Soybean | cytosol, mitochondrion, nucleus | 34.95 | 50.58 |
| VIT_10s0003g04610.t01 | Wine grape | nucleus | 60.48 | 43.35 |
| KRH36772 | Soybean | nucleus | 57.8 | 43.35 |
| HORVU5Hr1G010440.3 | Barley | cytosol, nucleus | 53.49 | 42.61 |
| GSMUA_Achr8P02970_001 | Banana | nucleus | 57.8 | 42.49 |
| PGSC0003DMT400054611 | Potato | nucleus | 57.26 | 41.28 |
| EER91177 | Sorghum | cytosol, nucleus, plastid | 56.18 | 40.82 |
| Zm00001d033244_P001 | Maize | cytosol, nucleus, plastid | 55.65 | 40.59 |
| Solyc02g069770.2.1 | Tomato | nucleus | 56.18 | 40.5 |
| GSMUA_Achr10P... | Banana | nucleus | 56.18 | 40.04 |
| Os03t0625900-01 | Rice | nucleus | 54.57 | 39.73 |
| Zm00001d013697_P002 | Maize | plasma membrane | 54.57 | 39.65 |
| TraesCS5D01G051600.1 | Wheat | nucleus | 53.49 | 38.42 |
| TraesCS5A01G043100.1 | Wheat | plastid | 53.49 | 38.27 |
| CDY45049 | Canola | endoplasmic reticulum, mitochondrion, nucleus, plastid | 19.89 | 37.95 |
| CDY71917 | Canola | cytosol | 11.83 | 18.03 |
| CDY59680 | Canola | cytosol | 10.22 | 16.89 |
| CDY26186 | Canola | cytosol | 11.02 | 16.4 |
| CDX96736 | Canola | cytosol | 11.02 | 16.4 |
| CDX81860 | Canola | cytosol | 11.02 | 16.4 |
| CDX83869 | Canola | cytosol | 11.02 | 16.4 |
| CDY21720 | Canola | cytosol | 10.75 | 16.0 |
| CDY60778 | Canola | cytosol, plastid | 10.75 | 16.0 |
| CDX95554 | Canola | cytosol | 13.98 | 15.95 |
| CDY18497 | Canola | cytosol | 13.98 | 15.95 |
| CDX92200 | Canola | extracellular | 13.71 | 15.69 |
| CDX95784 | Canola | cytosol | 13.71 | 15.69 |
| CDY64888 | Canola | cytosol | 12.1 | 15.05 |
| CDY52180 | Canola | cytosol | 6.18 | 14.2 |
| CDX86074 | Canola | cytosol | 11.29 | 14.09 |
| CDX93686 | Canola | cytosol | 11.29 | 14.09 |
| CDY44104 | Canola | cytosol | 11.29 | 14.09 |
| CDX77299 | Canola | plastid | 3.23 | 12.37 |
| CDX77303 | Canola | cytosol | 7.26 | 8.74 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 12.63 | 5.23 |
Protein Annotations
| MapMan:17.1.3.2.1.9 | Gene3D:2.130.10.10 | UniProt:A0A078HP44 | EnsemblPlants:CDY39169 | ProteinID:CDY39169 | ProteinID:CDY39169.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0034511 |
| EnsemblPlantsGene:GSBRNA2T00067354001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19865 | PANTHER:PTHR19865:SF0 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EF17D9 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | : | : | : | : | : |
Description
BnaC09g21750DBnaC09g21750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HP44]
Coordinates
chrLK032442:-:84068..86082
Molecular Weight (calculated)
41074.6 Da
IEP (calculated)
9.211
GRAVY (calculated)
-0.397
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKQQEETGR VRRAIASRVQ EPLSSDGFSV IVKHRHSVVS VALSDDDARG FSASKDGTIL HWDVSSGEKE IYKWPSDETL KSHGMKVREP RNKKHSRATL
101: ALAVSSDGRY LATGGVDRHI HIWDVRTREH VQAFPGHRNT VSCLCFRNGS TELYSGSFDR SVKAWNVEDK AFVQDSFGHQ DDVLAIDALR KERAISVGRD
201: RTMQLHKMPE QARMMYRAPA SSLESCCFIS DTEYLSGSDN GTVALWGMLK KKPIFLLKNE HSVTINENGD HDNVEYNNSC TASSWVSSVA VCRGSDLAAS
301: GAGNGFVHLM AVEATALRPL FKLPLSGYVN SMAFAKSGKF LIAGVGQETR FGRWGCLKSA QNGVAIHPLR LS
101: ALAVSSDGRY LATGGVDRHI HIWDVRTREH VQAFPGHRNT VSCLCFRNGS TELYSGSFDR SVKAWNVEDK AFVQDSFGHQ DDVLAIDALR KERAISVGRD
201: RTMQLHKMPE QARMMYRAPA SSLESCCFIS DTEYLSGSDN GTVALWGMLK KKPIFLLKNE HSVTINENGD HDNVEYNNSC TASSWVSSVA VCRGSDLAAS
301: GAGNGFVHLM AVEATALRPL FKLPLSGYVN SMAFAKSGKF LIAGVGQETR FGRWGCLKSA QNGVAIHPLR LS
001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA
Arabidopsis Description
YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.